PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0173s0028.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 498aa MW: 52543.3 Da PI: 9.0512

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0173s0028.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.6e-33	61	115	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFv+av+qLGG++kAtPk+++++m++kgLtl+h+kSHLQk+Rl Sphfalx0173s0028.1.p 61 KPRLRWTPQLHERFVDAVTQLGGADKATPKSVMRVMGIKGLTLYHLKSHLQKFRL 115 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.896	58	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-32	59	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-23	61	116	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.63E-16	61	116	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-7	63	113	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-19	165	212	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MYQIKKYTNP PSLMPHGRAQ HHTSLHQQLE QRPSSLYAGN LISSASDASG MNSSSSSADP 60 KPRLRWTPQL HERFVDAVTQ LGGADKATPK SVMRVMGIKG LTLYHLKSHL QKFRLGKKLH 120 SDLTNVHDTK KDGLSHGSSD MQVTNTSSAS DSVDPHQLNN PQDGIQITES ILLQMEVQHH 180 LQQQLEVQRS LQLRIEAQGK YLQSILEKAK ETLAGHTSSS PGLEAAHAKL AELASKVTND 240 PVLMGHGSFS LMSLPPGMIN NPEFLQHGVD PQGGGGGGGG GALSLPHLWQ QQQQLIPRQQ 300 SRVSDSSSQK SYLTSLTANK PEDSGGASVG GEHQTATEGG GNKSSSQAGG ISKSMQHGRS 360 NKAGSSSSYA NYMMQQGSLA GAGGALSSSA FALESPTSRR ATALQSMQAE ESLNGAGDGS 420 PHTSSSAASS LQSGKNMYHH GEMGAASPSH IRSSAATPTL ATPPYVKVEG SLDLNPGNGI 480 RMLGGSELDL NSYGWER*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MYQIKKYTNP PSLMPHGRAQ HHTSLHQQLE QRPSSLYAGN LISSASDASG MNSSSSSADP  60
KPRLRWTPQL HERFVDAVTQ LGGADKATPK SVMRVMGIKG LTLYHLKSHL QKFRLGKKLH  120
SDLTNVHDTK KDGLSHGSSD MQVTNTSSAS DSVDPHQLNN PQDGIQITES ILLQMEVQHH  180
LQQQLEVQRS LQLRIEAQGK YLQSILEKAK ETLAGHTSSS PGLEAAHAKL AELASKVTND  240
PVLMGHGSFS LMSLPPGMIN NPEFLQHGVD PQGGGGGGGG GALSLPHLWQ QQQQLIPRQQ  300
SRVSDSSSQK SYLTSLTANK PEDSGGASVG GEHQTATEGG GNKSSSQAGG ISKSMQHGRS  360
NKAGSSSSYA NYMMQQGSLA GAGGALSSSA FALESPTSRR ATALQSMQAE ESLNGAGDGS  420
PHTSSSAASS LQSGKNMYHH GEMGAASPSH IRSSAATPTL ATPPYVKVEG SLDLNPGNGI  480
RMLGGSELDL NSYGWER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	61	117	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	61	117	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	61	117	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	61	117	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-47	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0173s0028.1.p