PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0165s0029.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Nin-like
Protein Properties Length: 514aa    MW: 56014.4 Da    PI: 6.1613
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0165s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.41.1e-26420469352
                RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ++++ dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRkiks+
  Sphfalx0165s0029.1.p 420 GKLKMTDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKIKSI 469
                           6899********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.713409489IPR003035RWP-RK domain
PfamPF020429.7E-25422469IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MAGGQLGSPN CESVVLNSFS SPHFDINENL KTPKDNNPDE PFFNFTGFNI PMPTFNILTP  60
LPPINSGRSE RVEGVSEQDF SALLFDTKCN DSQGVCADDT LNGELIAFDE IDADIAKDSF  120
AIFNGTHDPF ILNPPASPLR INVPSSYPPS QSSRIYPMYF SPTAMFAPRS YIGAEAEGLM  180
EVEDRAPVNV EHGASTSGGS NPMSSVTGAM DWGGMPPEGT LIQPNLVQPH TQQLQCDSCQ  240
ILRRIIHSNG IQDTKLEIHG CDGQSYHAVL QTRFCIDDGF PASFEQQMVE FPVGNAEYVK  300
QFLLQYSLLR RKEGFVLRHD SLCTGGDGRL TSMGVASEGM MNTLARRMPK HMGSHIMLPE  360
LLCTSSDYSN SGCAYGKVGC GPHKVHRGGS VDSTDHPDAN VVAPVKPPKS NAAAQRERTG  420
KLKMTDLAQH FHLPINAAAK ELGICPTVLK KICRRNGMRR WPHRKIKSIE RIIATLEQTI  480
AEGVGHGDEG IRMEIAMLRN ERAQLCAGLL GET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358583.10.0uncharacterized protein LOC112273714 isoform X4
TrEMBLA0A2R6WYB10.0A0A2R6WYB1_MARPO; Uncharacterized protein
STRINGPP1S387_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-13RWP-RK domain-containing protein