PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0161s0021.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 495aa    MW: 55149.4 Da    PI: 4.8699
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0161s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.7e-51201462128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           +pGfrFhPtdeelv +yL +++++k+l++  vi+++diyk++PwdLpk ++ +ekew+fF++rd+ky+++ r+nr+t+sg+Wkatg+d+
  Sphfalx0161s0021.1.p  20 MPGFRFHPTDEELVAYYLPRQLRRKRLPV-AVITQLDIYKYDPWDLPKLATVGEKEWFFFCPRDRKYRNSLRPNRVTDSGFWKATGTDR 107
                           59***************************.89***************8778899*********************************** PP

                   NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++s+ + + +glkk+Lvfykgra kg+ktdW+mhe+rl
  Sphfalx0161s0021.1.p 108 PIYSTeGAKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 146
                           ****955566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.71419183IPR003441NAC domain
SuperFamilySSF1019412.75E-5720183IPR003441NAC domain
PfamPF023654.5E-2521146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDSVRLSKLE PQQSEDSLPM PGFRFHPTDE ELVAYYLPRQ LRRKRLPVAV ITQLDIYKYD  60
PWDLPKLATV GEKEWFFFCP RDRKYRNSLR PNRVTDSGFW KATGTDRPIY STEGAKCIGL  120
KKSLVFYKGR AAKGVKTDWM MHEFRLPAST TDAAHTLTQN VDNAINDVQL QQDGWAVCRI  180
FKKTKVSQKQ KQIGTGTSHE LASTTVDQPQ ESLGVHSQYL SVESKDQDSD SVGDDPEASD  240
DMISDFNSEG TSPAETVKDL PPAEMTPFEH LILCDESGRR SNITVPTDAS AFSLPEEHLY  300
ETSKAGLEAP TSELKSSHLS PLGRPTVEGG ITDSTFNIGS TTSSVMMASN RFPRERNYQI  360
FSDKSSNATE LSPSTRNTLE LVQSILSPSI DYGIQHRGSN ETMSERLKTA QNQDNSTLYV  420
GSTVESGESS MQPIGEQPGP GSMPELTVRV PQHVREFLDN LPPWDFSPLF ISPPSLAFIN  480
NSMNQSQDQL FDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-531318910174Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.19e-87NAC domain containing protein 94