PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0158s0040.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 1211aa MW: 132869 Da PI: 6.4856

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0158s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.6	1.3e-41	215	292	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adlseak+yhrrhkvCe+hska +++v+g++qrfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+q+ Sphfalx0158s0040.1.p 215 MCQVDNCKADLSEAKDYHRRHKVCEMHSKAVEATVTGVMQRFCQQCSRFHPLPEFDEGKRSCRRRLEGHNRRRRKTQP 292 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-34	208	277	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.351	213	290	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.32E-39	214	294	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.2E-31	216	289	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.63E-8	928	1087	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.2E-10	933	1089	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.61E-6	963	1087	No hit	No description
SMART	SM00248	12	967	997	IPR002110	Ankyrin repeat
SMART	SM00248	37	1028	1058	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1211 aa Download sequence Send to blast
MEREVAHIGV DSLTRTGSLL YQHQFFPGGN EKQPTLANCM FRPMDHENGP WSSPSNRDHT 60 MAQGGETLSH PKEWDMTAWN WDSVAFVAQS ASGMATDAAS GGTQIYSVDE NEEYRRVPEL 120 TLQLDRLSGD HVQPLLGEGS SESELRCRSF CRSQSPSPAL NGAKRLTRDD TAPEELESLS 180 LKLGGSSYPI LEEDGISSHG AKRFCTSSPQ SQFPMCQVDN CKADLSEAKD YHRRHKVCEM 240 HSKAVEATVT GVMQRFCQQC SRFHPLPEFD EGKRSCRRRL EGHNRRRRKT QPDPAARGYL 300 MGEEDLMGKD GAGLVGGLLH ILARLQASTS LDRGNIPIVD REALFKKAVL AALENRITPS 360 WNQLIPNLDH IAAGLVGRQE QVARSNGHAT DLSIETQYLL SRLAAAALPE ALALLLQSGG 420 QLSTTPGHVL GSHPLVHERA GPVPLTHAPP SSPDPVRMQA CPSQRQFGHS SSLHDPSVLP 480 PMRDKPAVPL ELVPQSTDSS LARPVAEQPM RNSELSAVQE NRVPPAPLMQ RLFPQQSTAH 540 HLTAAIGRDA RATGSSFRPI PAVPRPAMQP PIVQLSDSSQ SGSDEQLPAH PFANMENWKN 600 PTRRISLKLF GRTPEDLPDN LRTQIDTWLA HLPSDMESYI KPGCVVLTIY VAMPHSAWVE 660 LDRDLQGSLE KLFSICTDKF WHKGHILVQV EHQMVLIVDG NIVERKVMDP FSQPYIQSVR 720 PLAIVAGQET KISFKGFNLA HSGTRLLCVY RGKHLSQGVS SVEDEDTDNT DVESDIKSDE 780 VYSNDVEGVE NNSVVPTIDQ AVFKVDHTFT VCGARSDAVG RCFMEVERNL NGGNSKPVII 840 SNALVCKELC KLEEEIEAAS LRAAETAERD GLESCDILFC REVGRAVAEE NVACILHELG 900 WYFQSSSCWQ LNSSGSLDMV HALRMKQLLV FSVERDWCSV VQNLLDMPFE NAEADSFFSK 960 LSYVMQDKMS LLHHAVRRKC RPMVELLLAY VPSSLTKGTD SGLENFQRIM QFKLQWGNLI 1020 RPDMAGPAGL TPLHIAASMQ GAEDVVDALT SDPCQVGLLA WFNTQDESGQ TPHSLALLGG 1080 NVRSVQLVRA KVALLESVGG SVAINIPGES FPPSQDGRSS EALRSSWGNC RSASGEKLNA 1140 GKARSSCRVS ARCPGRQRGV LYSYIPKSFF LSLVLIATVC VCVSLVFKGP PPVKFVSSPF 1200 HWDGLGSGTQ *

Sequence ? help Back to Top

Protein Sequence Length: 1211 aa Download sequence Send to blast

MEREVAHIGV DSLTRTGSLL YQHQFFPGGN EKQPTLANCM FRPMDHENGP WSSPSNRDHT  60
MAQGGETLSH PKEWDMTAWN WDSVAFVAQS ASGMATDAAS GGTQIYSVDE NEEYRRVPEL  120
TLQLDRLSGD HVQPLLGEGS SESELRCRSF CRSQSPSPAL NGAKRLTRDD TAPEELESLS  180
LKLGGSSYPI LEEDGISSHG AKRFCTSSPQ SQFPMCQVDN CKADLSEAKD YHRRHKVCEM  240
HSKAVEATVT GVMQRFCQQC SRFHPLPEFD EGKRSCRRRL EGHNRRRRKT QPDPAARGYL  300
MGEEDLMGKD GAGLVGGLLH ILARLQASTS LDRGNIPIVD REALFKKAVL AALENRITPS  360
WNQLIPNLDH IAAGLVGRQE QVARSNGHAT DLSIETQYLL SRLAAAALPE ALALLLQSGG  420
QLSTTPGHVL GSHPLVHERA GPVPLTHAPP SSPDPVRMQA CPSQRQFGHS SSLHDPSVLP  480
PMRDKPAVPL ELVPQSTDSS LARPVAEQPM RNSELSAVQE NRVPPAPLMQ RLFPQQSTAH  540
HLTAAIGRDA RATGSSFRPI PAVPRPAMQP PIVQLSDSSQ SGSDEQLPAH PFANMENWKN  600
PTRRISLKLF GRTPEDLPDN LRTQIDTWLA HLPSDMESYI KPGCVVLTIY VAMPHSAWVE  660
LDRDLQGSLE KLFSICTDKF WHKGHILVQV EHQMVLIVDG NIVERKVMDP FSQPYIQSVR  720
PLAIVAGQET KISFKGFNLA HSGTRLLCVY RGKHLSQGVS SVEDEDTDNT DVESDIKSDE  780
VYSNDVEGVE NNSVVPTIDQ AVFKVDHTFT VCGARSDAVG RCFMEVERNL NGGNSKPVII  840
SNALVCKELC KLEEEIEAAS LRAAETAERD GLESCDILFC REVGRAVAEE NVACILHELG  900
WYFQSSSCWQ LNSSGSLDMV HALRMKQLLV FSVERDWCSV VQNLLDMPFE NAEADSFFSK  960
LSYVMQDKMS LLHHAVRRKC RPMVELLLAY VPSSLTKGTD SGLENFQRIM QFKLQWGNLI  1020
RPDMAGPAGL TPLHIAASMQ GAEDVVDALT SDPCQVGLLA WFNTQDESGQ TPHSLALLGG  1080
NVRSVQLVRA KVALLESVGG SVAINIPGES FPPSQDGRSS EALRSSWGNC RSASGEKLNA  1140
GKARSSCRVS ARCPGRQRGV LYSYIPKSFF LSLVLIATVC VCVSLVFKGP PPVKFVSSPF  1200
HWDGLGSGTQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-32	207	289	2	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	2e-88	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Sphfalx0158s0040.1.p