PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0124s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 515aa MW: 55396.8 Da PI: 6.8175 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 2e-30 | 237 | 295 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gC ++k+vers++dp+++++ Y+ eHnh+ Sphfalx0124s0044.1.p 237 ADLWAWRKYGQKPIKGSPFPRGYYRCSSNkGCLARKQVERSRNDPSMLIVSYTAEHNHP 295 699*************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-30 | 230 | 297 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-26 | 234 | 297 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 236 | 296 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.777 | 238 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-25 | 238 | 295 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 515 aa Download sequence Send to blast |
MEESHHELGL DFQDVCNTSP DSASTYSCLR RQSSSQLMGS SAAAGTETKP VEEEDTSCSA 60 CHELLVTRSS STARPAKMSS THELLQSSRP IPNPARPPRL GLRSVRNPGS SSSSSSSARM 120 QAVVKTEEYS SSSNGSQNIS TTTAAGAAAT IPSQHPLLTR RRNSSSSVTR LESQLPRRSS 180 SGTSPIHGAT AAVHGTDEDQ CRRSTKQQQQ KKRTVLVSLV GNNGGGRSSN EAHVPAADLW 240 AWRKYGQKPI KGSPFPRGYY RCSSNKGCLA RKQVERSRND PSMLIVSYTA EHNHPQPSHR 300 NLLAGCTRVT SSGKEAKASA QSCSSTTLEK RRPSDTATEL KSDSKEPAAV QCHDHSNHEL 360 RGQQWEGFTN GVDHESQPDD IVSIHNDKLF AAIPSSYSTS CTPYGIESSS QELHETPVVN 420 VVSLGKLQQI AIVQSYVESH DHLLLESLSG SSVKDEDFFA ELEELPDSSS VTSFACGSFL 480 EDPSDEGVVG ITVVDPYNLF SWSSISSLES KAAI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-21 | 234 | 298 | 11 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-21 | 234 | 298 | 11 | 80 | Disease resistance protein RRS1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01250.1 | 8e-40 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0124s0044.1.p |