PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0123s0052.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 1125aa MW: 124124 Da PI: 6.472

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0123s0052.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.9	2.2e-36	304	378	1	75
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +CqvegC+adls+ak+yhrrh vCe+hska +v+++g+ qrfCqqCsrfh lsefD++krsCrrrLa h++ +k Sphfalx0123s0052.2.p 304 MCQVEGCNADLSTAKHYHRRHNVCEFHSKARNVVAHGHVQRFCQQCSRFHVLSEFDDGKRSCRRRLAYHDALWHK 378 6********************************************************************976555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05911	1.2E-50	100	251	IPR008587	Filament-like plant protein
Gene3D	G3DSA:4.10.1100.10	2.2E-34	297	366	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.308	302	379	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.71E-34	303	383	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-27	305	373	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1125 aa Download sequence Send to blast
MEKEKESSRL SWPWKKKSSN KAAAAAVTTS LASAGGVGGA SPNLASLFQD NNQQETSVKK 60 LQNHTRAAAA DEATRLRQSE EKVKYISEQL ANALADITAK DNLVKQHAKV AEEAVSGWEK 120 AELEAMALKQ QLDTALHQKL VMEDRAAHLD GALKECMKQL RHAHEEHEQL MHDTLVKKTR 180 EYDKLRVEME TKLAEASHLL SQTRTELLES RAEGKALSHA LQERSRSLAE LGEAKGRAEA 240 DIKVLQCALT KTSHATTVVA QDNAQSYTER ATVATQDKAR SYTEQVSGGR LEESAGSPGS 300 QVPMCQVEGC NADLSTAKHY HRRHNVCEFH SKARNVVAHG HVQRFCQQCS RFHVLSEFDD 360 GKRSCRRRLA YHDALWHKPM PSALTCDAAV ECIGMKGEED SDLSGSPASD EQPASAKNNL 420 QLSTPAATFG RVPKEDQHSS QPGMQQTSSQ PRGLERTIWR NFHDSETTSV APVSVEDVRK 480 AELSTKDKVG FVTRKAKRAA RTALAHTAFG QAYEERYLQE KDQHQETSGL ESPSYSRIGF 540 PSPARVTDGH LKQENQLSTI GIGDTSENCF QTLLPEMKND SIFTMGRKGK FEGADSIEFL 600 FKQAEDMSKV VGVGLQWSKV VVTKQFGVVV QHIGEHFWSD LWKETSFSPM RIPIPKPPTK 660 LSMFNLTPET SSKRFGVGLV GSKLENNRVY VEDNQNQTGE MFPFIFELAE KMGLSKNAKD 720 SNFQHPSGIS SEAVEGEKND HGGPLLETME GGGETDQGGT SSEPMDLMEV GESSQGGNSG 780 EPMEGVVSGQ GGPSSGPTEV GGQRDQQSSD FQLRFESLQA KGPQDSNENK SLTVIVIPEV 840 GGTFYEGLSN RQVQPDCRIK GAAIAPWFKF KFEILGGERK ITTTTETRCD LGGAQLTLHE 900 DWDLGYCHDN ITISLTCEDP QAVRVSPGIV VAMDVMKRAM TETFTGSMSR ANQLASQANV 960 QVQMPMVPIG IQAQGTLEVT DTIADSHALA VTVETSNTQF SGFNVNQLEC SGSLVFNFLY 1020 PEEIVDVKGR GKRQFIHAGI NKTLWPTIVG KWFPLDREEA RLYIFKTNRD IHSIGSLMRF 1080 MHQRYEVPFV INHAMSHIHY YEDKELRGAG VKSVDRVLTK YPEV*

Sequence ? help Back to Top

Protein Sequence Length: 1125 aa Download sequence Send to blast

MEKEKESSRL SWPWKKKSSN KAAAAAVTTS LASAGGVGGA SPNLASLFQD NNQQETSVKK  60
LQNHTRAAAA DEATRLRQSE EKVKYISEQL ANALADITAK DNLVKQHAKV AEEAVSGWEK  120
AELEAMALKQ QLDTALHQKL VMEDRAAHLD GALKECMKQL RHAHEEHEQL MHDTLVKKTR  180
EYDKLRVEME TKLAEASHLL SQTRTELLES RAEGKALSHA LQERSRSLAE LGEAKGRAEA  240
DIKVLQCALT KTSHATTVVA QDNAQSYTER ATVATQDKAR SYTEQVSGGR LEESAGSPGS  300
QVPMCQVEGC NADLSTAKHY HRRHNVCEFH SKARNVVAHG HVQRFCQQCS RFHVLSEFDD  360
GKRSCRRRLA YHDALWHKPM PSALTCDAAV ECIGMKGEED SDLSGSPASD EQPASAKNNL  420
QLSTPAATFG RVPKEDQHSS QPGMQQTSSQ PRGLERTIWR NFHDSETTSV APVSVEDVRK  480
AELSTKDKVG FVTRKAKRAA RTALAHTAFG QAYEERYLQE KDQHQETSGL ESPSYSRIGF  540
PSPARVTDGH LKQENQLSTI GIGDTSENCF QTLLPEMKND SIFTMGRKGK FEGADSIEFL  600
FKQAEDMSKV VGVGLQWSKV VVTKQFGVVV QHIGEHFWSD LWKETSFSPM RIPIPKPPTK  660
LSMFNLTPET SSKRFGVGLV GSKLENNRVY VEDNQNQTGE MFPFIFELAE KMGLSKNAKD  720
SNFQHPSGIS SEAVEGEKND HGGPLLETME GGGETDQGGT SSEPMDLMEV GESSQGGNSG  780
EPMEGVVSGQ GGPSSGPTEV GGQRDQQSSD FQLRFESLQA KGPQDSNENK SLTVIVIPEV  840
GGTFYEGLSN RQVQPDCRIK GAAIAPWFKF KFEILGGERK ITTTTETRCD LGGAQLTLHE  900
DWDLGYCHDN ITISLTCEDP QAVRVSPGIV VAMDVMKRAM TETFTGSMSR ANQLASQANV  960
QVQMPMVPIG IQAQGTLEVT DTIADSHALA VTVETSNTQF SGFNVNQLEC SGSLVFNFLY  1020
PEEIVDVKGR GKRQFIHAGI NKTLWPTIVG KWFPLDREEA RLYIFKTNRD IHSIGSLMRF  1080
MHQRYEVPFV INHAMSHIHY YEDKELRGAG VKSVDRVLTK YPEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-25	294	373	2	79	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	9e-34	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Sphfalx0123s0052.2.p