PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0115s0061.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 402aa    MW: 44847.4 Da    PI: 9.518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0115s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-151482241497
                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           + +++p +f+++hg+    +k+ +l+de g +Wev +  +++s +  +++GWk+F++ + +++gD + F+l+g+s+f   v+++
  Sphfalx0115s0061.1.p 148 SGIWIPLEFMKDHGHH--IGKEAVLQDECGMKWEVSV--SRGS-WSGFRAGWKKFADNHAMDVGDKIEFTLIGDSTF--AVRIL 224
                           5699*********966..889****************..6666.6689*************************9999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-18129225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-19130227IPR015300DNA-binding pseudobarrel domain
CDDcd100174.79E-17131224No hitNo description
SMARTSM010193.1E-12133227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449135227IPR003340B3 DNA binding domain
PfamPF023623.0E-12147224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVRRPSGGTI YTVPTTMVDS SKKAASAAEK GRISNLMDSV MTASGGKTRI SVLMDAVMKA  60
SEEADAADFS EGCISHESNA KNFERPKSCE DEVLAEGRSG EATRRARASL QQKFKVWESQ  120
EQEETLSVSP PTFTKTVLAG SLAASHGSGI WIPLEFMKDH GHHIGKEAVL QDECGMKWEV  180
SVSRGSWSGF RAGWKKFADN HAMDVGDKIE FTLIGDSTFA VRILGQRQPV LDPRHCEDSH  240
ETEHKGISRK RSARHISSKS RNWTSDVNFV EGEVEVTHHQ FHAGTGLGMI SNPCKRARSK  300
RFWNHKRRDS SGDTPQPEIR NPRLLQDKFD TKLEYPSTRS KVRQVKSDLT RQDNKALMYN  360
SSAANKLRAL VEIFEEEYQR TNIDVVYSQW SSAPKVGMKG R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-07B3 family protein