PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0101s0045.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | WRKY | ||||||||
Protein Properties | Length: 644aa MW: 67880.9 Da PI: 9.1259 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.4 | 1.3e-32 | 282 | 339 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+g+Hnh+k Sphfalx0101s0045.2.p 282 EDGYNWRKYGQKQVKGSEYPRSYYKCTQANCPMKKKVERSH-DGQVTEIVYKGDHNHPK 339 7****************************************.***************85 PP | |||||||
2 | WRKY | 103.6 | 1.1e-32 | 459 | 517 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct gCpv+k+ver+++d k+v++tYeg+Hnh+ Sphfalx0101s0045.2.p 459 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDVKAVITTYEGKHNHD 517 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-28 | 279 | 340 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-25 | 279 | 340 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-35 | 281 | 339 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.501 | 282 | 340 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 282 | 338 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.3E-37 | 444 | 519 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-29 | 451 | 519 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.193 | 454 | 519 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 459 | 518 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 460 | 517 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MLRKPTPSRP QATVSMRASY STTTSTNTGT TSTSETNNGR DNNVLGGGLL YRGGGGGGGA 60 GIQSPMSSMV SGFLADQVEQ DMESSRSLAA RGAANTSSSS SSAGVVAAAA GSAEAGGGAP 120 RPPSSSVRFG SLPPSRIPIP RSTGYLTIPP GLSPTTLFDS SPVLLSTSQS EPSPTTGTFP 180 LGVPTFFNPS VSTKPAIITT EPSSKDKVSA AAADQGFVFK PFVKPVPQNA MSRMASSLVQ 240 AHGQQQQQQQ NGPDSEQTSP GSEQDHSLLP TVLPPFPERP SEDGYNWRKY GQKQVKGSEY 300 PRSYYKCTQA NCPMKKKVER SHDGQVTEIV YKGDHNHPKP QPTRRLSLSG GPGAAGFASI 360 VKNEGGGAEQ DGLDSSRAGR LAPSLSFTLG ATGATEPSSP STSDDEGEEG SKLSAEDGDD 420 DEPDSKRRRK DKKVEAVPVS RTIREPRVVV QTTSDVDILD DGYRWRKYGQ KVVKGNPHPR 480 SYYKCTNVGC PVRKHVERAS TDVKAVITTY EGKHNHDVPA ARNSGNNTLS QNIAPVIPAA 540 TSLQDQGAQF VNSKFGHVLD DGSFKREKFG AEMDSGMRTG MATRGLAANG EVPISASLGH 600 SEFRDGSTVQ GRDTFIHEGS FGARPKQEQP ESTSRSTLIA SST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-38 | 282 | 520 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-38 | 282 | 520 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 426 | 431 | RRRKDK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368160.1 | 1e-171 | WRKY transcription factor SUSIBA2-like isoform X2 | ||||
TrEMBL | A0A2K1L2S7 | 1e-170 | A0A2K1L2S7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S135_80V6.1 | 1e-171 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 4e-97 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0101s0045.2.p |