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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0092s0054.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ERF | ||||||||
Protein Properties | Length: 792aa MW: 82861.7 Da PI: 5.1193 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.6e-19 | 510 | 562 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd + +r++lg+f+taeeAa a++ a++k++g+ Sphfalx0092s0054.1.p 510 TRYRGVRQRP-WGKFAAEIRD----SarQGARVWLGTFDTAEEAAVAYDTAALKMRGP 562 68********.**********....33334**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.03E-29 | 510 | 568 | No hit | No description |
Pfam | PF00847 | 1.4E-13 | 510 | 561 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-22 | 511 | 569 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.4E-36 | 511 | 575 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-31 | 511 | 568 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.182 | 511 | 569 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 512 | 523 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 535 | 551 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MNFFGGRTRS RVADGAGAGA IAAVSASAVD AAFVVGGRTS SSSGTSSGSC DRRSSSSWGS 60 SEGSGCVQIQ AAFHGRLCGV DPLEALARKA ESAVDLLQTT TSEQCGSPPC TTISGNGFQS 120 FAPESISSSC FRSKLGEPGL QLLSTQAESC GLIELKRSRP QDDLSSYGVE EALAEPRRKS 180 QKAWVIARNL RNSLGKKLFA ECLREKVGHL VKARETVELK QLQTATSTSP AAPVASSSLR 240 KDLGDDDVSL LHEIISAAAS SADQPPREEE QELDLHGSHW KLRHHRGFSS DWQLVVNDQD 300 MNLPAAASAH EDPRLEQAPA AASFDAAVYS TAASPAAASA RPSSTSSELL ASSRFELLHN 360 RAESSLCTDL PQAENRPKES IHPAVAANSE SSSWLASLGG AGFAEYASSA SFDIHHRLLQ 420 GAEDDQLLQV LKSATGADHE TTSASLQQQQ PAPRSLTYRS ARPLAFPEAT AMRLLMQRSV 480 AAAPTAAPKP QECTPASDTT PPKNPQKWRT RYRGVRQRPW GKFAAEIRDS ARQGARVWLG 540 TFDTAEEAAV AYDTAALKMR GPKARLNFLI PKTTATDSDP AAATDAGPPE TAVAPPPAHA 600 SPAVEACTDS ATDGSNNFMS SDRTAFVSAD CPETAAAIAA HAASSTGLGG ACTKVSLADA 660 SPPTGGGACT KVSLADPSSP TGGGGACTRD SALADISNSF MSLDATDFAT IAAASLSSIF 720 PESANRGLVD HDALELEDAF LAELMESTHH HDVFLSPISD HVPLSPTSNL NDICNFALFS 780 PLIMQQDCEE E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-24 | 512 | 568 | 6 | 62 | ATERF1 |
3gcc_A | 2e-24 | 512 | 568 | 6 | 62 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 3e-18 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0092s0054.1.p |