PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0090s0096.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 544aa    MW: 59423.6 Da    PI: 7.7291
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0090s0096.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.4e-073073340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          +r C+ ++ +++ ++C  ++ +lC +C ++ H        H++v
  Sphfalx0090s0096.1.p 30 ARACDVCGIQRACWYCAADEAYLCGKCDTAVHVAnilalrHDRV 73
                          578***************************99545677777665 PP
2CCT66.48.1e-23499541244
                   CCT   2 eaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           +a++lRYkeKr+tR+F+K+irYe+RK +Ae+RpR+KGrFvk a
  Sphfalx0090s0096.1.p 499 QARVLRYKEKRRTRLFSKTIRYEVRKLNAERRPRIKGRFVKTA 541
                           689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0112875IPR000315B-box-type zinc finger
SMARTSM003363.4E-72875IPR000315B-box-type zinc finger
PfamPF006434.1E-53173IPR000315B-box-type zinc finger
CDDcd000212.87E-43175No hitNo description
Gene3DG3DSA:3.10.450.508.8E-4444541IPR032710NTF2-like domain
PROSITE profilePS5101715.507498540IPR010402CCT domain
PfamPF062031.3E-17499540IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MATTTKKKKK TIMMSSNVQT TAMAIAGRAA RACDVCGIQR ACWYCAADEA YLCGKCDTAV  60
HVANILALRH DRVRLASHGA PLPKPFKRSS SSHVSSQQQY SKMNDSVVDG ASASGSPTAV  120
LITDQNLQQQ DFPQAQDHQL LPSRKRSRRT RPHPHHLRNL TATGQGGGRR PRYKIQKSIE  180
DESGMVQVKI ESISDFCRVS DLDFMRNDDD EEASKKRFEE GGGGGAHEVP AFNTVQNRKS  240
SEISPGCAPG FSEAHSASAD SFLPYFKGKA AQAYAQEDDL HSCDDDADQF LVPDCFDNCC  300
LDSGVEIRCD VDGTISLVED ASAVKEEEEN KAARQSSEIS RGCAPGFSEA ASTTTKIEKI  360
HERPPHPSLL PSAKFLAGSV VKLEQSAAAS SGTSSERAKK EEAQEMLLGC SLQALSEEGQ  420
VRQVPCLRLD YEDVLNAWSD REAFCWMDPQ GRADRLLNAD DGSTAAAADG RRMEEVIGVV  480
PVPNVRAGDH PGEAAAGKQA RVLRYKEKRR TRLFSKTIRY EVRKLNAERR PRIKGRFVKT  540
ANC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.11e-18B-box type zinc finger protein with CCT domain