PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0090s0026.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 596aa    MW: 63674.6 Da    PI: 5.7016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0090s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18284334255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr ++ +gr++AeIrd +    r  +r +lg+fgtaeeAa a+++a+++l+g
  Sphfalx0090s0026.1.p 284 RYRGVRHRP-WGRFAAEIRDST----RpgARLWLGTFGTAEEAAVAYDKAALRLRG 334
                           8*****888.**********42....356*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.62E-28283344No hitNo description
PROSITE profilePS5103223.011284342IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21284343IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-29284343IPR001471AP2/ERF domain
SMARTSM003801.2E-32284348IPR001471AP2/ERF domain
PfamPF008479.0E-12284334IPR001471AP2/ERF domain
PRINTSPR003674.6E-9285296IPR001471AP2/ERF domain
PRINTSPR003674.6E-9308324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MREIYADSSF ALQVMQRDFI RRPVICSSDH ESLLESARSA PAAAPANESN WDMMLALAAA  60
PAGKQATDDE EEDGDDLQTS LRNGSSISPL SLEMYGDDGV FEGSQDAAAE YYESVDSRFL  120
QSGGFAKVLR EYSPRSWRVS AVGSSCSPRS KRLRVSCSTP PGLHAQLAGG ALSEGPQLAF  180
NEDDSEDMFV FSLIKNAVSN GWVPANDDPD SCPQQALPDA ASPALVRSPT RLGAAAISAR  240
NDTGPAAQVI VGTAPARIAT STSATTITGA AGGRVKQAAQ AVKRYRGVRH RPWGRFAAEI  300
RDSTRPGARL WLGTFGTAEE AAVAYDKAAL RLRGSRAHLN FPAAATASSS DELPDLISSN  360
PPAPTTTQLV ANGPLGIPTA ADHQEEYQPP PPPILQSASR SQSVAEYQNS NLLLDDGWKK  420
HMLLQLPEPQ ETAASSTIII SQPPQAPTPP PTPTPTPPRP PPSAATRSRF YSTLSLHEQA  480
IINCSNLKRS RSEYNQNDDY YSSSCNSGGR LMSTKCIDNH VQDTAPHAER SLASSPPSSP  540
TAKQQVGDSE CGAESAEPGR WSWSWSPKSC SPRAWLTQFC NIFSPILPRS PLSRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-24283342463ATERF1
3gcc_A5e-24283342463ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-21ethylene responsive element binding factor 2