PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0086s0055.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 853aa    MW: 92729.7 Da    PI: 6.0195
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0086s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52.1e-0794117327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + +C ff++ G+C  G++C+F Hgp
  Sphfalx0086s0055.1.p  94 RTPCYFFSQ-GYCAKGEKCPFLHGP 117
                           689******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0071341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6851342IPR000571Zinc finger, CCCH-type
PfamPF156632.7E-121469No hitNo description
PROSITE profilePS501039.9584470IPR000571Zinc finger, CCCH-type
SMARTSM003562.34669IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.00491118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-691116IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-492117IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-594117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-496117IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MAEAHASRDD DALKKNTDCV YFLASPLTCK KGNDCEFRHS ESARVNPRDC WYWLGGKCLM  60
PDCPFRHPPL EGRTAVGATV GPPVPGAAGV NKARTPCYFF SQGYCAKGEK CPFLHGPATP  120
TSSSPRVPAP LQKPARANAL EVTGKKTGNA IGSATVVEKP IAAEGPAIPT CHPREASLST  180
HVAGGISKLS PKKDGETPGS ELQNGAGLGR ADVQLATSNA VLGSTNRLHV RQPGGDEWPQ  240
NGMESDEWWE ESSPGFDVLV DAGPERSRYN EDPDLQDSYE GLEPGRPGPA AQRRGKSLYG  300
LDEIDQYDYE YPGVFEQAAY DPAGPYNHGE FEPYEQQGYE HDMAYEQQSH PRSGVYGGRG  360
IEEMYGRERE RIMSNREGEN GVGTNHRELK RRRVDGPPHH ILQNRLRQRT ESGRGVLDEL  420
LSQRWMEQNP QKLRELNLRQ QLFVQQQGID KFSNNTSWQK SGRSAGESAR IARCAPPQNM  480
NGEVIVKRLP NGRENEEARK GSAPVSDIKL ARLRREAGQS ALKRENGRPK AASKVEAETL  540
HAGGNLTKER GSEGRKEPPS TFAGPKTLAQ IRAEKRKGGA VDEKSEVTEM PGGLGKGVQS  600
IESETQNVIS NVALPQQDMP GDFNSLAVQS GAHEGKLGAQ TTKNQDQLPA TSMSQHRTGG  660
IASEEKKIHL AKSVPAHLQV PKFVGPKSLS AILQAKRKAV SETARSPDDG IWGQNQRQSG  720
VEGATSPVSS SIKPTVVDCH IPGKSAEVED SGHPDVGEQS LSYIKERRLQ AVSLVMQDEE  780
MVHSVEALRN DNVVEELDSV RALGNLFSNA GTDGYEGDTR DKAVVFADDD DEDFGLDDED  840
DEFAKKLGGF FS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389393KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-