PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0085s0006.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 766aa    MW: 84487.4 Da    PI: 4.863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0085s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12567613455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A  YI++Lq
  Sphfalx0085s0006.1.p 567 NHVQAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLDDAKTYIQDLQ 613
                           6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5376266IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.56E-14561617No hitNo description
PROSITE profilePS5088816.856563612IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-18566630IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9567613IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17567629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-16569618IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
METESLRMEG QLMLSLLGDD DMMMLEAFIG TGVYGGNPFQ QQNNNSSVVA ATAAAAAPAT  60
RQEEQDLVEI GGETALQQIL QSLVDNRPEN WTYVIFWQLS STATGDMMLV WGDGYFKGRE  120
EDQQQLEMSE QLQQQRGGQE EDQLLRRKIL GGLQALIGTS STDQEDAATS SGLDNVTDTE  180
WFYLESMLCS FTPGVGIPGQ ALASGQHMWL LEANKASNQS CTRAPLAMMA GIQTILCVPI  240
PGCGVVELGS TDLIAENWHV VHDIERAWGL NDMPNLSMQL HGNLDLLQSS LSNATLTKTN  300
GSITNPSLIS TDSCLAKNTR RHFSTEKMGS SMASTNSFDS FWSEDLNPSS DVLSTDTVDK  360
EYVLPSWSPY TIDRLPPCED RHPLSLASRS SSLTLSSVSD VKPVVSMQQA GIRSSLAPER  420
PTSAVRVELR PQINNPHPSY GYPQQKGIAE VRDISKPSEP DQSMRLNQHV PQEKVMTNFC  480
ARGNDKKIVA EKPGPVLKLL HQQIETKGSP PHGVIRRSGI DQSELDSIES EAEVTFKDSG  540
ECSLQSGSRP PRKRGRKPAN DREEPLNHVQ AERQRREKLN QRFYALRAVV PNVSKMDKAS  600
LLDDAKTYIQ DLQRKLEETE SQIMELQNDA RGSSNKPLEL PVPIITLTTT NSSEKGLQSN  660
LKMSTKATAA PPPLREFLLE EKPTIHVQIM GQEVVIQLSC SKDIYTIANV ILALQDLDLE  720
VQHSNTSAVE NTILHILIVK MKMAKLLTKE QLVNSLEGAL QTRVW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-30732716195Transcription factor MYC3
4rqw_B9e-30732716195Transcription factor MYC3
4rru_A9e-30162647227Transcription factor MYC3
4rs9_A9e-30732716195Transcription factor MYC3
4ywc_A9e-30162647227Transcription factor MYC3
4ywc_B9e-30162647227Transcription factor MYC3
4yz6_A9e-30732716195Transcription factor MYC3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-36bHLH family protein