PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0078s0062.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 514aa MW: 54949.3 Da PI: 9.2444

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0078s0062.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.2e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQk+Rl Sphfalx0078s0062.1.p 47 KPRLRWTPELHERFVDAVAQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKFRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.022	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-32	44	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-8	49	99	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-22	148	195	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MYQIKKYTSS PPGGLMPHRP QTSPHLERPS LYAGSLAAHG VNAADPKPRL RWTPELHERF 60 VDAVAQLGGA DKATPKSVMR VMGVKGLTLY HLKSHLQKFR LGKQLQRDTN IHEANKDGPR 120 GSSDMRLSSN VASDSMATLQ PKHPQDGIEI TEAIRVQMEV QHRLQQQLEV QRSLQLRIEA 180 QGKYLQSILE KAKETLAGHA SSSPGLEAAH AELTELASKV SNDPLGQSFS WMNLPGINNP 240 ESLQHAVDTR GGASSLPRQQ QLPRQQSRVS DSSSQKSYLT SLTANPEDSG GASGCGEQQA 300 ATGKKRACSS CTYSEDDDGE GQQMVQLREM NANFPPMQGS SNARAEDRLA KAAAALKGVN 360 EWKGPPSWSV ASQDSLSLSA GIVGAEGAGD KFSPADGSMG RSKETISNSH AFMMKSSEGG 420 ASALERPTPR RGTIQSLAEE RNAGGGSPHT SITGSSLQVT TKYCSNMGAP HRPAQTPAST 480 NMKVGGALDL NYGNGISMPR GSELDLNTRG WER*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MYQIKKYTSS PPGGLMPHRP QTSPHLERPS LYAGSLAAHG VNAADPKPRL RWTPELHERF  60
VDAVAQLGGA DKATPKSVMR VMGVKGLTLY HLKSHLQKFR LGKQLQRDTN IHEANKDGPR  120
GSSDMRLSSN VASDSMATLQ PKHPQDGIEI TEAIRVQMEV QHRLQQQLEV QRSLQLRIEA  180
QGKYLQSILE KAKETLAGHA SSSPGLEAAH AELTELASKV SNDPLGQSFS WMNLPGINNP  240
ESLQHAVDTR GGASSLPRQQ QLPRQQSRVS DSSSQKSYLT SLTANPEDSG GASGCGEQQA  300
ATGKKRACSS CTYSEDDDGE GQQMVQLREM NANFPPMQGS SNARAEDRLA KAAAALKGVN  360
EWKGPPSWSV ASQDSLSLSA GIVGAEGAGD KFSPADGSMG RSKETISNSH AFMMKSSEGG  420
ASALERPTPR RGTIQSLAEE RNAGGGSPHT SITGSSLQVT TKYCSNMGAP HRPAQTPAST  480
NMKVGGALDL NYGNGISMPR GSELDLNTRG WER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371011.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371012.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371013.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371014.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371015.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371016.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371017.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371018.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024371019.1	1e-105	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024373739.1	1e-106	protein PHR1-LIKE 3-like
TrEMBL	A0A176VRT7	1e-108	A0A176VRT7_MARPO; Uncharacterized protein
STRING	PP1S13_270V6.1	1e-106	(Physcomitrella patens)
STRING	PP1S25_131V6.1	1e-105	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0078s0062.1.p