PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0074s0095.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 659aa MW: 69207.7 Da PI: 6.6693

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0074s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	182	239	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k ++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk+s Sphfalx0074s0095.1.p 182 KLVACPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGSLRNVPVGAGRRKNKHS 239 6789****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	179	237	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-32	183	238	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.658	184	238	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	186	222	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:1902455	Biological Process	negative regulation of stem cell population maintenance
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MSKSFQWMMK VEDRVFGAAA DAGADTSRKD SGTVIKMDPA FKLFGKTIAV AATTTAAAAP 60 GFSDAGADAG ALFGMRATTH WAIAPFCSQK NGNSIAMTAE DEQNLDELRS SSGSNSGVVD 120 DDSSHHPVVL KTGCGLGPSG AEPSSYVDSA GAHDQVHLTQ QTTTEVEDGE DDDKTLPHKS 180 GKLVACPRCD SLDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGSLRNVPVG AGRRKNKHSG 240 GIHAGPSLQS SSDSGQVIEP VYQDSTQIDL SDGTRLEQTT NHRASALKIP QPRNLGPVGE 300 HPSSSPLLAS PGGSTDSCLT VNMSSPFPLH LSGSASLNPF AAATHNTMAS FKSTSVEMGM 360 KPSSDSPTRL GQMIKASYTV NGAALSSGEI TTEHGTVGSS KEDAGSSLTG PMHTVVQDGH 420 IFQHQHSPSA VYHQSMAMGD LGGWTSNGTP FSFFSEAWPY GYNVGWSGLP PVPSTNTFCT 480 ATTPGSLGCN PPSPKFASWC PVPPGALWTG GAPWAPGIPG MPVACSGVVP ETNRYFSVSD 540 AAASKVSAAV TSVSWVGAAE GWSLKAAPGG TAGKRDSPEG GKTDSMWGPK SMRIDSKTTN 600 SNEWNNRVGI IKSDPDAAGT LSKTFYPKME NQTTTTTNKQ FYNPHMFVNT MQFQETVT*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MSKSFQWMMK VEDRVFGAAA DAGADTSRKD SGTVIKMDPA FKLFGKTIAV AATTTAAAAP  60
GFSDAGADAG ALFGMRATTH WAIAPFCSQK NGNSIAMTAE DEQNLDELRS SSGSNSGVVD  120
DDSSHHPVVL KTGCGLGPSG AEPSSYVDSA GAHDQVHLTQ QTTTEVEDGE DDDKTLPHKS  180
GKLVACPRCD SLDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGSLRNVPVG AGRRKNKHSG  240
GIHAGPSLQS SSDSGQVIEP VYQDSTQIDL SDGTRLEQTT NHRASALKIP QPRNLGPVGE  300
HPSSSPLLAS PGGSTDSCLT VNMSSPFPLH LSGSASLNPF AAATHNTMAS FKSTSVEMGM  360
KPSSDSPTRL GQMIKASYTV NGAALSSGEI TTEHGTVGSS KEDAGSSLTG PMHTVVQDGH  420
IFQHQHSPSA VYHQSMAMGD LGGWTSNGTP FSFFSEAWPY GYNVGWSGLP PVPSTNTFCT  480
ATTPGSLGCN PPSPKFASWC PVPPGALWTG GAPWAPGIPG MPVACSGVVP ETNRYFSVSD  540
AAASKVSAAV TSVSWVGAAE GWSLKAAPGG TAGKRDSPEG GKTDSMWGPK SMRIDSKTTN  600
SNEWNNRVGI IKSDPDAAGT LSKTFYPKME NQTTTTTNKQ FYNPHMFVNT MQFQETVT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	2e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0074s0095.1.p