PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0073s0003.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 264aa    MW: 28835.3 Da    PI: 6.607
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0073s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25e-07112132122
                           --S---SGGGGTS--TTTTT-S CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCk 22 
                           ykt+lC+ f   G C+yG++C+
  Sphfalx0073s0003.1.p 112 YKTRLCNKFNN-GGCPYGAQCR 132
                           9**********.*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.42E-5109137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-8110132IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-4111137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.845111138IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4112132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFRHQKYVRP GAVYETTNHG VLNLNLTVEV NHEKKSTKNL SLGSQSSEQC LDALELDGEE  60
GDESLDESVQ PVRMELKPDE MAAAVHAVPA LIKGVNQDTE QGNVGGWSTH LYKTRLCNKF  120
NNGGCPYGAQ CRAPHGWLPP SWSGPEQPWS VHPPGLSSVE CPPHVGQFGP PPQTGMVPLP  180
FLPTKGQPDF GRPPLPSGPL CHPSFGPHNG IRPPPPWTPN GWPAPPSAWV EPHHGLHPGN  240
FGWRHNEGVL HPDLLSPPLQ QHRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-