PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Sphfalx0063s0069.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 460aa MW: 50307.9 Da PI: 7.1758

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0063s0069.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.4	2.8e-06	295	314	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r nL+ H+ Sphfalx0063s0069.1.p 295 FSCHVCSKTFNRYNNLQMHM 314 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-5	288	317	No hit	No description
SMART	SM00355	0.23	295	317	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.658	295	322	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-4	295	314	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	297	317	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	342	374	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	7.49E-5	360	399	No hit	No description
SMART	SM00355	110	379	399	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MTWRRSHEQG ASVAVPRSLS SIPHAHPVPP LCHEWCNRHL AALQPHDVSS VGWPTVAAAI 60 PFTDMSLRPG GTTAAAASSS NSQISTGPDS PRSTSTVSRF HPLEQPQHCS SLQQHSNQHF 120 FEQASKLYQR QRSCSVSEAA GPSPPPHLRR ALPFLSLSPP TADDEVPDEE EEEDLQQLEK 180 SYPGRTAAAV QQLSAPAESN AACQEYSDDN DVTVALHIGP PSSSTHDAAC MEAAGAKRHD 240 GTSGLGGYEL ALPAADAEST KGSHHHIAER VGRLLLEGQY WIPTSAQILV GPTQFSCHVC 300 SKTFNRYNNL QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCAQGCRN NIEHPRSKPL 360 KDFRTLQTHY KRKHGIKPFM CRKCCKTFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK 420 DHIRAFGNGH AAHGGGDSCE DEDDPSVMSE DDADPDISG*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MTWRRSHEQG ASVAVPRSLS SIPHAHPVPP LCHEWCNRHL AALQPHDVSS VGWPTVAAAI  60
PFTDMSLRPG GTTAAAASSS NSQISTGPDS PRSTSTVSRF HPLEQPQHCS SLQQHSNQHF  120
FEQASKLYQR QRSCSVSEAA GPSPPPHLRR ALPFLSLSPP TADDEVPDEE EEEDLQQLEK  180
SYPGRTAAAV QQLSAPAESN AACQEYSDDN DVTVALHIGP PSSSTHDAAC MEAAGAKRHD  240
GTSGLGGYEL ALPAADAEST KGSHHHIAER VGRLLLEGQY WIPTSAQILV GPTQFSCHVC  300
SKTFNRYNNL QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCAQGCRN NIEHPRSKPL  360
KDFRTLQTHY KRKHGIKPFM CRKCCKTFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK  420
DHIRAFGNGH AAHGGGDSCE DEDDPSVMSE DDADPDISG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396645.1	1e-135	zinc finger protein WIP6-like
Swissprot	Q9SVY1	1e-110	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2K1JDJ6	1e-134	A0A2K1JDJ6_PHYPA; Uncharacterized protein
STRING	PP1S203_59V6.1	1e-131	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-105	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0063s0069.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]