PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0062s0022.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NF-YC

Protein Properties

Length: 178aa MW: 19392 Da PI: 4.0488

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0062s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	53.5	5.2e-17	80	162	17	99
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P++r++k++k+d d++ + ea l++ka elf+ ++ ++ + +e++r+++ sd+++ v +t+ +fl d vp++ Sphfalx0062s0022.1.p 80 FSLAFPISRVRKLVKSDGDIQWVGVEAGFLIAKAAELFLEKFVEDAFDRMQESHRNSITYSDLSSHVVSTERLEFLSDFVPEK 162 56689***************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-21	84	161	IPR009072	Histone-fold
Pfam	PF00808	2.8E-10	84	144	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.53E-17	93	162	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
METSFTESDS EESGRELPSS AAAEEEEEEE EKTENGGYSH EENGNSNSND EDGDGDDGTT 60 TMSRSFVVGG GRTSKSASVF SLAFPISRVR KLVKSDGDIQ WVGVEAGFLI AKAAELFLEK 120 FVEDAFDRMQ ESHRNSITYS DLSSHVVSTE RLEFLSDFVP EKVLVSSILP SKALMEN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400121.1	2e-47	putative transcription factor C16C4.22
TrEMBL	A0A2K1J3J8	4e-46	A0A2K1J3J8_PHYPA; Uncharacterized protein
TrEMBL	A9TUW3	3e-44	A9TUW3_PHYPA; Predicted protein
STRING	PP1S329_24V6.1	6e-47	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	7e-18	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Sphfalx0062s0022.1.p