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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0060s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | SBP | ||||||||
Protein Properties | Length: 1036aa MW: 114095 Da PI: 6.6754 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.7 | 1.9e-39 | 183 | 259 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+adls+akeyhrrhkvCe+hska +v+++g+ qrfCqqCsrfh lsefD++krsCrrrLa+h errrk+q Sphfalx0060s0080.1.p 183 MCQVEGCKADLSTAKEYHRRHKVCEFHSKARNVVAHGRVQRFCQQCSRFHVLSEFDDGKRSCRRRLAGHKERRRKSQ 259 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-35 | 176 | 245 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.094 | 181 | 258 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.18E-37 | 182 | 263 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-30 | 184 | 257 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1036 aa Download sequence Send to blast |
MTSSANTSDH EGDPNWTTVN YGHLEAWGNL HPSTSATKNV LGSSGIPGLA PTGRAGLQSN 60 LLSSFAHQRY LESYGGMQHL NPNMVKREPG SQAGNQHSIG VSMNGALFFM ILYDLMQRAL 120 TKTSHATTVV AQDNARSYTE RATVATQDKA RSYTEQASGS DFIPFVEGRL EESAGSPGSQ 180 VPMCQVEGCK ADLSTAKEYH RRHKVCEFHS KARNVVAHGR VQRFCQQCSR FHVLSEFDDG 240 KRSCRRRLAG HKERRRKSQL RALTWDAAVE CIWMKGEEDS DLSGSPASDS KSMLSHPKNC 300 GSLSLVSLDD SDEQPASAKN NLQLNTPAAT FGRVPKEDQH SSQPGMQQTS SQPRGLERTI 360 WRNFHDSETA SVAPVSVEDV RKAELSTKDK VGFVTRKAKR AAETALAHTA FRQAYEERYL 420 QEKDQHQETS GLESPSYSRI GFPGPTRVTD GHLKQENQLS TIGIGDTSEN CFQTLLPEME 480 NDSIFTMGRK GKFEGANSVE FLFEQAEDMS KVVGVGLQWS KVVVTKQFGV VVQHIGEHLW 540 SDLWKETSFS PMRIPILKPP TKLSMFNLTP ETSSKRFGVG LVGSRFQSRC VYVEDNEKQT 600 SEMFPFIFEL AEKMGLSENA KESNFQHPSR ISSEAVEGEK NDHGGPLLET MEGGETDQGD 660 TSSEPMDPMD VGESSQGGNS GEPMEGLESG QGGPSSGPTE VGGQSDQQSS PFQLRFQSFQ 720 AKGPQDSNEN KSLTVIVIPE VGGTFYEGLS NQQVQPDCRI KFAAIAPWLK FKFEILGGER 780 KITTMTKTAC DLGGGELQLH EDWNLGYCHD NITISLTCAD PQAVRISARS VVATNDTKRI 840 MTETITGSTS RANQVSGQAN VQVQIPVVPI GVQAQGTLDV TDTIVNSRVL VIIIKSSKTQ 900 SAGFDVNEVG CASSLVFSFV YSEKIVDVMA RGQRHFVDAG ISKTLCPPII GKWIPLDRED 960 ACLYTFKTER NIYSIRSLRR SHAERKEPIS FMQQRYEVPF FINHAMSHIH CYENTLLQGP 1020 GLQTLPKVVT KFPKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-31 | 173 | 257 | 2 | 84 | squamosa promoter binding protein-like 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 9e-37 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0060s0080.1.p |