PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0047s0068.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 349aa    MW: 39257.8 Da    PI: 6.513
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0047s0068.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.8e-1483169186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  + +Li a re+ ++l r++ + ++W+evsk +      ++  ++++qC+ k ++l+kry+++k+   ++      ++p+fd l
  Sphfalx0047s0068.2.p  83 EWSEAATSVLISAFREKFHALDRSNFRSKDWAEVSKIVnaqcVNEKSPKTQEQCRMKVDSLKKRYRQEKDKLAGN---IPCKWPWFDVL 168
                           5***********************************9966666677778889*********************85...55679***988 PP

              trihelix  86 e 86 
                           +
  Sphfalx0047s0068.2.p 169 D 169
                           7 PP
2FLO_LFY27.54.2e-0926132165129
               FLO_LFY  65 vakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkr 129
                           + k+a   +tv tL++m d+eld++m+   e f +d   Ger G+kaa+ + +r+l +e++e + 
  Sphfalx0047s0068.2.p 261 AKKLASSKYTVATLLEMSDRELDEIMT---EEF-IDAARGERRGFKAAIWSRKRKLAQESEEDME 321
                           56889999****************996...445.78999*****************997644433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-1982171No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEDDSSGGGG DGGELVGDAH NNHHHHHHHH LQQHHDIIGT SGSHELLQQQ QQPDHQDSEF  60
EEEHVLSKIE SPHKGPGREP ATEWSEAATS VLISAFREKF HALDRSNFRS KDWAEVSKIV  120
NAQCVNEKSP KTQEQCRMKV DSLKKRYRQE KDKLAGNIPC KWPWFDVLDD LIGGSPKQSR  180
IGSARKQARF LCSPPPARPL SVVHTPYFGA LSPSVYLKKK LTRVVSLQDG LDQDLMAGSL  240
EDNIEALLHN FLEEETARDF AKKLASSKYT VATLLEMSDR ELDEIMTEEF IDAARGERRG  300
FKAAIWSRKR KLAQESEEDM ELANTSGSML EISDNFAKKE KKSGSFVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379771.11e-152uncharacterized protein LOC112284305
TrEMBLA0A2K1KA391e-151A0A2K1KA39_PHYPA; Uncharacterized protein
STRINGPP1S136_122V6.11e-152(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-22Trihelix family protein