PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0044s0073.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | WRKY | ||||||||
Protein Properties | Length: 568aa MW: 60640.7 Da PI: 5.0064 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.4 | 3.5e-29 | 299 | 357 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+ +++ Y+ eHnh+ Sphfalx0044s0073.1.p 299 ADLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRNDPSKLIVSYTAEHNHP 357 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-29 | 292 | 359 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.465 | 293 | 359 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-25 | 296 | 359 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.7E-35 | 298 | 358 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-24 | 300 | 357 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MKGSSCAGAC NMPGRLGSPS SSELSDQRTK TSSILDNSQS LTSTISEEYP AIVKACRSNS 60 VDALLTLVPS AHSSMDSQGE VGDSNGTGMR ASNLPDSVGL RESSEASSCT KKKAVDDETL 120 VQSSASLNLV NVEDASQLFA GASAPETSTQ HSWPIPKRMG LRTSPCNVVA ESSENASQLS 180 TTAGAAQHPV TRRSNSLTVE SRTRSSGNVC RAANPEDLSP DKISEAGRLR KPDEALAAVE 240 PLTAKIEQEI TPTKESELPA VSADSNPQGP KRRKTQQKRT ILVSVVGNGG KSSSEDVSAD 300 LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC LARKQVERSR NDPSKLIVSY TAEHNHPWPS 360 HRNSLAGSTR VTSPHKEPSG SARTCSMASL EKQGSSDTAA ELKAESEEPA RPCDAHSMHE 420 MVVQEEEEFA NGADDESKAE IVSVTNEKLL SGAITFSTSD THHSTGSPGA LHEPLNVDSS 480 GQMQIVVQSY TESHEHLMLE SLSRSSMEDE DFFAELEELP DSSMAVFGWG SFLEDQSDDE 540 GVGTTVVDPY NLFCWSTTSS VKSKAVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 299 | 360 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 299 | 360 | 17 | 80 | Disease resistance protein RRS1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-44 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0044s0073.1.p |