PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0044s0073.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 568aa    MW: 60640.7 Da    PI: 5.0064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0044s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29299357259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+ +++ Y+ eHnh+
  Sphfalx0044s0073.1.p 299 ADLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRNDPSKLIVSYTAEHNHP 357
                           699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29292359IPR003657WRKY domain
PROSITE profilePS5081133.465293359IPR003657WRKY domain
SuperFamilySSF1182903.27E-25296359IPR003657WRKY domain
SMARTSM007749.7E-35298358IPR003657WRKY domain
PfamPF031062.2E-24300357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MKGSSCAGAC NMPGRLGSPS SSELSDQRTK TSSILDNSQS LTSTISEEYP AIVKACRSNS  60
VDALLTLVPS AHSSMDSQGE VGDSNGTGMR ASNLPDSVGL RESSEASSCT KKKAVDDETL  120
VQSSASLNLV NVEDASQLFA GASAPETSTQ HSWPIPKRMG LRTSPCNVVA ESSENASQLS  180
TTAGAAQHPV TRRSNSLTVE SRTRSSGNVC RAANPEDLSP DKISEAGRLR KPDEALAAVE  240
PLTAKIEQEI TPTKESELPA VSADSNPQGP KRRKTQQKRT ILVSVVGNGG KSSSEDVSAD  300
LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC LARKQVERSR NDPSKLIVSY TAEHNHPWPS  360
HRNSLAGSTR VTSPHKEPSG SARTCSMASL EKQGSSDTAA ELKAESEEPA RPCDAHSMHE  420
MVVQEEEEFA NGADDESKAE IVSVTNEKLL SGAITFSTSD THHSTGSPGA LHEPLNVDSS  480
GQMQIVVQSY TESHEHLMLE SLSRSSMEDE DFFAELEELP DSSMAVFGWG SFLEDQSDDE  540
GVGTTVVDPY NLFCWSTTSS VKSKAVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-192993601780Disease resistance protein RRS1
5w3x_D3e-192993601780Disease resistance protein RRS1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-44WRKY family protein