PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0042s0130.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 433aa    MW: 47674.4 Da    PI: 8.8543
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0042s0130.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.7e-1252137899
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                 +++++p  f+++hg++   +   +le  +g++W v +   +  +   + +GW+ F+  + L  gD +vF+l+g+s+f   v+ 
  Sphfalx0042s0130.2.p  52 LPLDPDCWMRIPCAFVKQHGHS--FKDRAMLEGANGQRWPVGI--GGAFDFKGFMEGWRPFAAYHCLVKGDQLVFTLVGHSQF--AVQG 134
                           3344569************877..5557***************..77777766779***********************9999..9999 PP

                           E-S CS
                    B3  97 frk 99 
                           f+k
  Sphfalx0042s0130.2.p 135 FDK 137
                           887 PP
2B3551.5e-17277369498
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            +++ +v +   + lp  f + h + k++  + +l+d +++r+W vk   r +s++   l++GWk+F+ a++L+egD++vF+l++  + 
  Sphfalx0042s0130.2.p 277 MMKKTHVAQPFYVHLPEGFSKMHALLKRT--EGVLMDlTRSRRWPVKW--RTNSRGhLGLGQGWKSFACAHDLQEGDVCVFELVDPPNL 361
                           45566777778899*********666543..4555664889*******..555555388************************998999 PP

                           ..EEEEE- CS
                    B3  91 elvvkvfr 98 
                            l+v+vf+
  Sphfalx0042s0130.2.p 362 VLLVHVFQ 369
                           99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-1739140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1941140IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-1642136No hitNo description
SMARTSM010194.8E-443138IPR003340B3 DNA binding domain
PfamPF023623.2E-856137IPR003340B3 DNA binding domain
PROSITE profilePS508639.95360138IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-19267369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-20269370IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-19272368No hitNo description
PROSITE profilePS5086313.817274371IPR003340B3 DNA binding domain
SMARTSM010197.6E-16274371IPR003340B3 DNA binding domain
PfamPF023623.2E-14278369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDGNNVVLAG SGSCEHDDGQ QQFSKRQKNH RREPGEATQG ACFIKTMVDS NLPLDPDCWM  60
RIPCAFVKQH GHSFKDRAML EGANGQRWPV GIGGAFDFKG FMEGWRPFAA YHCLVKGDQL  120
VFTLVGHSQF AVQGFDKNGC SKKGTAIVCT ICSRRNDLTA PANRSVVGKL KCTISKRYEK  180
VEKKAADTVV MMVNKQQCSS AIPKLEIPRE QQVKSEHYVL NDLGSIKTQE SLGCIPKPAS  240
PRRQRQQQRC SPTGKLPPSS PPSPAAVKTT NPSFKIMMKK THVAQPFYVH LPEGFSKMHA  300
LLKRTEGVLM DLTRSRRWPV KWRTNSRGHL GLGQGWKSFA CAHDLQEGDV CVFELVDPPN  360
LVLLVHVFQV SRIGNSVAGN SCPLPELPFS DSETTETDVT TPQSSDSDCN EIEDIHGDRK  420
CTGGYVGTTK SS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein