PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0036s0042.10.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 334aa    MW: 36430.6 Da    PI: 6.8693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0036s0042.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-16272308135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kgl
  Sphfalx0036s0042.10.p 272 CVHCGIGEkmTPMMRRGPSGPRTLCNACGLMWANKGL 308
                            ****988889***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.2E-8128163IPR010399Tify domain
PROSITE profilePS5132014.661128163IPR010399Tify domain
PfamPF062001.0E-12130162IPR010399Tify domain
PROSITE profilePS5101712.888196238IPR010402CCT domain
PfamPF062034.3E-15196238IPR010402CCT domain
SMARTSM004011.2E-12266319IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.774266324IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11269314No hitNo description
Gene3DG3DSA:3.30.50.102.9E-15271313IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440272299IPR000679Zinc finger, GATA-type
PfamPF003201.1E-13272308IPR000679Zinc finger, GATA-type
CDDcd002024.06E-15272314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSDTDHLALT QSLHGHQIGL HPHNVTHDID LGHPQGHHSH GYDDVYGHAQ PNADAAAETQ  60
AHSKAQANSD RGHGQHVHDG HGMHHGQENG AGTHEHDDDP GDEEGLDEAV MHSDEGPEEG  120
PPQPLSVRSQ RSTQLTLSYQ SEVYVFDTVP PEKVQAVLLL LGGREIPPGM SGANMSYHHH  180
HKGLSELPAR MDMPHRLASL TRFREKRKER CFDKKIRYTV RAEVAQRMQR KKGQFASARA  240
LGREAGAVAN WDGTAVPAQG AGPVGMQAEV MCVHCGIGEK MTPMMRRGPS GPRTLCNACG  300
LMWANKGLLR DLSKNIPPSL VTQQPQILQQ QEV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395439.11e-130GATA transcription factor 28-like isoform X1
RefseqXP_024395440.11e-130GATA transcription factor 28-like isoform X1
RefseqXP_024395441.11e-130GATA transcription factor 28-like isoform X1
RefseqXP_024395442.11e-130GATA transcription factor 28-like isoform X1
RefseqXP_024395443.11e-130GATA transcription factor 28-like isoform X1
RefseqXP_024395444.11e-130GATA transcription factor 28-like isoform X2
SwissprotQ8GXL71e-73GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2K1JJY11e-128A0A2K1JJY1_PHYPA; Uncharacterized protein
TrEMBLA9SE081e-128A9SE08_PHYPA; Predicted protein
STRINGPP1S69_103V6.21e-129(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-76ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]