PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0029s0117.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 376aa MW: 40346.2 Da PI: 9.0122

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0029s0117.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119	1.8e-37	69	126	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k ++cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk+ ++ Sphfalx0029s0117.1.p 69 KPIPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGTRKKVHR 126 6789**************************************************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	69	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-32	70	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.22	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MVIMHLATMN HCEQEELVDP HDLIHQASGD SVSSAAAGDQ QQSQQLAGSV TTSRGSGGCM 60 RAAERPVMKP IPCPRCQSMN TKFCYYNNYS VNQPRHFCRN CQRYWTVGGT LRNVPVGGGT 120 RKKVHRTRQR SMSSSDGLQP RDSRGDFSPA AGAGLNALNM TQVVQSNVLL PSTLQNLVTT 180 QQQLSLLSSQ MTGAGGKVGS MSSYGNYQQP VLQQQLGSMT ELPPNTTTTT SPHLPTFLHY 240 LSNLDHQRER QNIHGSFNAG SSLSKNLLAA STTPATSTAG LMMNLQQDHV MVSTSLHSSA 300 TSSMYEHQSS TSTMPMNSRG LQLAGGGSNI VQAAPGSLFS NVIGGYYTIS SPQKLDGNQI 360 EFLNSVLQKP GYWGA*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MVIMHLATMN HCEQEELVDP HDLIHQASGD SVSSAAAGDQ QQSQQLAGSV TTSRGSGGCM  60
RAAERPVMKP IPCPRCQSMN TKFCYYNNYS VNQPRHFCRN CQRYWTVGGT LRNVPVGGGT  120
RKKVHRTRQR SMSSSDGLQP RDSRGDFSPA AGAGLNALNM TQVVQSNVLL PSTLQNLVTT  180
QQQLSLLSSQ MTGAGGKVGS MSSYGNYQQP VLQQQLGSMT ELPPNTTTTT SPHLPTFLHY  240
LSNLDHQRER QNIHGSFNAG SSLSKNLLAA STTPATSTAG LMMNLQQDHV MVSTSLHSSA  300
TSSMYEHQSS TSTMPMNSRG LQLAGGGSNI VQAAPGSLFS NVIGGYYTIS SPQKLDGNQI  360
EFLNSVLQKP GYWGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-31	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Sphfalx0029s0117.1.p