PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0029s0017.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bZIP
Protein Properties Length: 222aa    MW: 24213.1 Da    PI: 5.7913
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0029s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.92.6e-091021401351
                           HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                           N++A r++R++Kka +++Lee v +L+  N++L k+l+e
  Sphfalx0029s0017.1.p 102 NKVAVRKYREKKKAHTAHLEEQVNQLKVRNQQLMKRLQE 140
                           9*********************************88876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-693157IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-7100140No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-10101157No hitNo description
PfamPF077161.6E-8101147IPR004827Basic-leucine zipper domain
CDDcd146865.25E-11102148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDDGEVDQLW EQNLFEENGT CELPSISSTL CSIDSLFDEV FESTQTCTHT HTCNPPGPDN  60
THTHTCYHTH TQLLATGDKG DELGDKSGIV PAGGNKKCSL GNKVAVRKYR EKKKAHTAHL  120
EEQVNQLKVR NQQLMKRLQE QACLEAEVFR LRSLLAEFRG RIDAEIGGFP AQKPCLNNQT  180
RVALSEDCNV QPLSGGYCVG TVNIPCATDL PCLHTTAASG S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401501.12e-75basic leucine zipper 23-like
RefseqXP_024401502.12e-75basic leucine zipper 23-like
RefseqXP_024401503.12e-75basic leucine zipper 23-like
SwissprotQ8GTS23e-58BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A2K1J4Y54e-74A0A2K1J4Y5_PHYPA; Uncharacterized protein
STRINGPP1S34_90V6.18e-71(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-50bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]