PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0029s0016.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 599aa    MW: 66392.9 Da    PI: 5.919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0029s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.51.7e-20358415359
                           -SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 Dgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg+  W+KYG K++ ++ f+r+YY+C+  +C++kk v+ +++dp+v++++Y g H+++
  Sphfalx0029s0016.1.p 358 DGHPwWKKYGSKNIYNASFSRAYYKCSVMDCRAKKMVQPTDKDPSVFQVIYVGVHTCS 415
                           7775279*************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-20350416IPR003657WRKY domain
SuperFamilySSF1182901.7E-19356416IPR003657WRKY domain
SMARTSM007744.5E-21356416IPR003657WRKY domain
PfamPF031062.9E-18358414IPR003657WRKY domain
PROSITE profilePS5081114.217363412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDVLHGCLSA SVIRKIGAAE RDLVSVQCVD KVQEMLGRAI KDQQDLLDIF ESAAASSHEM  60
QQEEEARQLL DVAGSCWNTS STCTSTTSES STLLTSLTRA KLENSLDWCH LALCRLTEIF  120
GQSPAPPASA AARSVTTRQA SCRYPGRRMN DHKSQQQLEP DFFDLKFEDH LDSRLLTSNG  180
GGRSLKTKKG YQRSLDKSLN MLDSDLEPSR EETFEWIHKT VMDAELPDDN QAAARDMKIF  240
TPEIEEPSKS VIRQAAAAST APPAAARVNL SAIKDIKMQG ASAAGDDHIP QVEDRDHADQ  300
QRQINDSSFM SRRNPNIRAW KRDIQAAGSN AEEQNQAPVI LYQHLRPGEN SKKGIPEDGH  360
PWWKKYGSKN IYNASFSRAY YKCSVMDCRA KKMVQPTDKD PSVFQVIYVG VHTCSHTANT  420
RKRKRNVSRG GAVQAAADKA ANLQQFPSRE EQDHHQSPMK PTTPPMRSVL QHQTDHQPAT  480
THVATDDQGG QPEITSQLAA SAMHDFDEVE LGGLETLEDK DFFPLIKLPA PSASSSPVHH  540
HHHHELRVED RVVADNELLM GDAMSDFPPC SWLDFVSDSF GPPEITNSDM AESFQDSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-14WRKY DNA-binding protein 46