PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0025s0041.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 682aa    MW: 75256.9 Da    PI: 8.5676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0025s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19435486256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr+++ +g+++AeIrdp  ng  +r++lg+f taeeAa a++ a+++++g+
  Sphfalx0025s0041.1.p 435 HYRGVRYRP-WGKFAAEIRDPARNG--ARVWLGTFTTAEEAALAYDSAALQMRGH 486
                           69*******.**********97676..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-30435494IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22435494IPR016177DNA-binding domain
PROSITE profilePS5103223.749435493IPR001471AP2/ERF domain
CDDcd000186.19E-27435493No hitNo description
PfamPF008475.3E-14435486IPR001471AP2/ERF domain
SMARTSM003803.5E-33435499IPR001471AP2/ERF domain
PRINTSPR003671.3E-9436447IPR001471AP2/ERF domain
PRINTSPR003671.3E-9459475IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKIIPEHHGD QDSAETRMGN SSGGGPDDGS SCCLIGKGNH MSTAKGVIGE RPKVLHQKKA  60
WMVANQLRHT LGHARFAEAI GEIVTKHLDV SMNSSQEMVV HAERLQTAAV DVTPADNSGA  120
SHQMSPSYEK KKQPMEMAYI AREHWSVADQ ASPGSSSSHT PASAALTDLF TDEENSARAT  180
LNDFHRRLNF QTSQETAQHW PTSRHFDTSW RETLVGRPQQ QQQTAWSFPS MYIQPTFSTS  240
AGVNLLSPIP TANISRKPRT GLEAVDQSTT LHFSPPLMSW KTAAPSSAHS SSKLFDKAPN  300
CQVDKQPPRI CSEQDSDNLA RIVDALTEAE VSSRVVPLQS VPLNRRHPFP EAAAMGFFYK  360
KPELQVTTSG MNMRNSSSRS NLTTADKETG SSDTTAEKDT RLLKIDAGLQ ERKGGDGDKT  420
EASPTTTPSK QRKWHYRGVR YRPWGKFAAE IRDPARNGAR VWLGTFTTAE EAALAYDSAA  480
LQMRGHRAIV NFPLKASLAS VKPRSVAKPV ALSLAKSRTE AETIAAAATT ATAADTRFKS  540
KKMREELDTW DHDHVSKKLS YCSAQCAADD NVTKEKTQQN SQRNQKLNPF HGLGQLGIEK  600
QHLQQQFQQN FVRDKTTNPN PRLELQLQLG IEKQHVQEQL QHNVREETKQ QNLVELQDLG  660
LEYLEQLLSS SGSPSTGTEP E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-29435495262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-23ethylene responsive element binding factor 2