PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0179.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 794aa    MW: 87626.5 Da    PI: 5.0896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0179.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13575621455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI++Lq
  Sphfalx0023s0179.1.p 575 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAITYIQELQ 621
                           6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-5561245IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.55E-15569625No hitNo description
PROSITE profilePS5088817.384571620IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-19574639IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18575635IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10575621IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-18577626IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MEGSLNFRSS WGDDELMMLE AFMETGVHAG GYSSSPLRNN NSSVDTGQST DWAGINSETP  60
LQRTLQFLVE NRPESWTYVI FWQLSPTPTG DMLVWGDGYF KGREEDQLEN AQLQREGVQE  120
KDQLLRRQIL GELQALVGST DQDDASASPG VDYVSDSEWF YLVSMSYSFP QGVGTPGRAL  180
ATGQPVWLLE ANKASNQSCT RAQLAMRAGI QTLLCVPTGS GVVELGSSDL IDENWHVVQN  240
IKKLFDETAW GLSDIPANSS MQVNPGDLDF LQPSLSNATL TAVTNGSITN NNPGSLISAD  300
SSRAAKDSRQ HNFSMEKMGS SMASTNMDSF DSIWSSEDFP LSDVLSADTV DKEHVLPGLS  360
PYIVDRSPLC EDRHHPSLPA SSPPTLIRSS VSEVQPLLEQ AVIRSSLPPD SRPPSAITRI  420
ERQPQINPHP INGAYPQQKM DVQEVRDISK YFELSLNQTS MRLIQPVPEE KVTIIHAIGD  480
DMKIVTERPQ QASTISKLPE QQQQQQHIIR VLKEFPPATH DAIGRSSIDQ SELDCIESEA  540
EVTFKDSAEC SLSIGPRPPR KRGRKPANDR EEPLNHVQAE RQRREKLNQR FYALRSVVPN  600
VSKMDKASLL GDAITYIQEL QHKLQEAESQ LKELRISHAR GGSSNMPPQE SSPVPPVIIT  660
PTATNSTKMP GLMYPNSETT SIKPGATAAF REFSVEEKPA VHVHIMGQEA LIRLSCLKHI  720
YSIADIILAL QDLHLEVKHS NTSAMENSLL HVVIVKMKMA ELLTKEQLLA SLQGALQVRG  780
MAKQNHQSFQ GTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-31572465193Transcription factor MYC3
4rqw_B5e-31572465193Transcription factor MYC3
4rs9_A5e-31572465193Transcription factor MYC3
4yz6_A5e-31572465193Transcription factor MYC3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.37e-37bHLH family protein