PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0020s0252.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 489aa    MW: 53393.1 Da    PI: 5.4636
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0020s0252.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.7e-14233329186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm............rergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                           +W++  + +L++a  e+ ++l rg+   + W+++++++              +g  ++++qC+ k +nl+kryk ++e ++     + s
  Sphfalx0020s0252.1.p 233 EWSEGATSVLLQAFGEKYRALDRGNFTSKIWADIAARVnayamtvvdsgsVGEGPPKTQEQCRIKVDNLKKRYKVEREKKRVS-GSTIS 320
                           5***********************************************9999999********************99999975.67778 PP

              trihelix  78 tcpyfdqle 86 
                           ++p+fd +e
  Sphfalx0020s0252.1.p 321 KWPFFDTME 329
                           ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-18233331No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MRMVMHNAVD NMDGSSDEHH VVVGRMEMGP EGLRLLEDNN GNRILYGEKV IVDEEDEREE  60
EEEEEEDGGG GLGGPGVVDH HHHHHGSSNN AHKLQFVQHL GYQEQHQQRE NHNSIDGGGE  120
EQQQQQPHHH NGDAGYGVGG RPLHHHHQQQ EDGEDDVEEP KLGELGRAML MVDAVNNKVG  180
EDGRDRPASD VDVGTAQSPH PGSGGGGGAG AGGSGGKSGR GGGGKTSREP PIEWSEGATS  240
VLLQAFGEKY RALDRGNFTS KIWADIAARV NAYAMTVVDS GSVGEGPPKT QEQCRIKVDN  300
LKKRYKVERE KKRVSGSTIS KWPFFDTMEE LIGSNPRLMR GVGGLDLPVL ALENSVQPLA  360
IRSSLQEGER IYYLEASAGG DGDQASETVP KISPMFERGK RKRALKDIER ENVNAPSLRA  420
LFEGYNIPSI IIDAMVQEDM DENTLINTKD ITALIDQLRI KHRLHIKLGP AERIKQAIEA  480
AREKKQAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214222GGKSGRGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388933.11e-141uncharacterized protein LOC112288694
TrEMBLA0A2K1JT631e-140A0A2K1JT63_PHYPA; Uncharacterized protein
STRINGPP1S39_263V6.11e-141(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-15sequence-specific DNA binding transcription factors