PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0020s0167.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

CO-like

Protein Properties

Length: 576aa MW: 61328.6 Da PI: 6.0569

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0020s0167.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.1	5.7e-06	4	42	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +ee +++ +C+ ++ lC +C + H+ H Sphfalx0020s0167.1.p 4 PCDFCEEGRATVYCRADSARLCLSCDRHVHSAnalslrH 42 6****99*****************99545555555 PP
2	CCT	63	9.2e-22	518	561	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeK+k RkF+KkirYesRKa+A+ R+RvKGrFvk+ Sphfalx0020s0167.1.p 518 RNSAMLRYKEKKKIRKFDKKIRYESRKARADIRKRVKGRFVKAG 561 999**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	6.2E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.428	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.06E-6	4	47	No hit	No description
CDD	cd00021	0.0038	47	88	No hit	No description
Pfam	PF06203	3.8E-16	518	560	IPR010402	CCT domain
PROSITE profile	PS51017	15.18	518	560	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005886	Cellular Component	plasma membrane
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MDAPCDFCEE GRATVYCRAD SARLCLSCDR HVHSANALSL RHVRTLLCDG CNLRPAAVRC 60 PVENLALCES CDWDSHGNSP IKSQHRRHAF DCFAGCPSAA ELGSLWGCDL VPSSVESRGV 120 STATRTAAPR NLQGFVNSNG SSYGAPGKVA TFASMSAAAA AGGPPLLAKS PVPTTGPVMM 180 GKEGGGGQGS KQQSREAVVQ QLHKLRVLDP QVQMQEVPMS LSLHLSKKPP SSLQSSPSEP 240 LTRASCVSQI QEQEQQPKTC TNQQPHLNHH QQQQQQAANL QNSRSLDSQI LVASETLELK 300 TEVCSDGLMQ GGDALWHSSS CQLWGQNMQD LGICGGEGDP CEGFSMADID LSFDNYEDIF 360 SSTQGLSSWS SNDIEAAAGC TPVGQDTIGE NQCEHMQSIP ELQLLEVNNG AMSGVSGCPQ 420 TQGYKGELAG QGPGPPPSPE MSEVGMMMGA AGLSSSNMES LQLVSQPTGS SLSLPLSGLS 480 GDSSDYLECT AASSMFLNAD PPSWAPTSPD SGALTQARNS AMLRYKEKKK IRKFDKKIRY 540 ESRKARADIR KRVKGRFVKA GQAYDYDPVG TTRSF*

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MDAPCDFCEE GRATVYCRAD SARLCLSCDR HVHSANALSL RHVRTLLCDG CNLRPAAVRC  60
PVENLALCES CDWDSHGNSP IKSQHRRHAF DCFAGCPSAA ELGSLWGCDL VPSSVESRGV  120
STATRTAAPR NLQGFVNSNG SSYGAPGKVA TFASMSAAAA AGGPPLLAKS PVPTTGPVMM  180
GKEGGGGQGS KQQSREAVVQ QLHKLRVLDP QVQMQEVPMS LSLHLSKKPP SSLQSSPSEP  240
LTRASCVSQI QEQEQQPKTC TNQQPHLNHH QQQQQQAANL QNSRSLDSQI LVASETLELK  300
TEVCSDGLMQ GGDALWHSSS CQLWGQNMQD LGICGGEGDP CEGFSMADID LSFDNYEDIF  360
SSTQGLSSWS SNDIEAAAGC TPVGQDTIGE NQCEHMQSIP ELQLLEVNNG AMSGVSGCPQ  420
TQGYKGELAG QGPGPPPSPE MSEVGMMMGA AGLSSSNMES LQLVSQPTGS SLSLPLSGLS  480
GDSSDYLECT AASSMFLNAD PPSWAPTSPD SGALTQARNS AMLRYKEKKK IRKFDKKIRY  540
ESRKARADIR KRVKGRFVKA GQAYDYDPVG TTRSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-38	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Sphfalx0020s0167.1.p