PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0019s0035.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 488aa    MW: 53027 Da    PI: 7.6209
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0019s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003259283123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y+C+   C+k+F+++ +++ H ++H
  Sphfalx0019s0035.1.p 259 YQCShtTCNKTFKNPQTMRMHRKSH 283
                           99*********************99 PP
2zf-C2H211.70.00083331349220
                           EETTTTEEESSHHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                           +Cp C+k+F   ++L+rH 
  Sphfalx0019s0035.1.p 331 RCPACKKTFVGLYELRRHF 349
                           6*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.6E-6255284No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6257283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024259283IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907259288IPR007087Zinc finger, C2H2
PROSITE patternPS000280261283IPR007087Zinc finger, C2H2
SuperFamilySSF576678.39E-7330380No hitNo description
SMARTSM003550.29330353IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280332353IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099360381IPR007087Zinc finger, C2H2
SMARTSM0035566360380IPR015880Zinc finger, C2H2-like
SMARTSM00355180386407IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMQQDFLTVR DGSDCLVSNA ADPDEQFCAP FASLLDKEER LPSLAMAATT SAYTSSTPFQ  60
EVCGDQFVED PSSSSSLSQQ EFLTASPAVA LTSMAPSQLS EPSLLEQQQS RPVRIVADAN  120
YVQHINTPVM HPNLVSTLKS IISPMPPPSH HSLVDAEAMK QELVGCGGAI GLSAPPQPSH  180
NNFFELAVHK RAQQGGQQPG QYGSGPPSCS QPWLCSGNDT KQVLNSGSFN QVSVAAGRRQ  240
LDKLAADVPV DLIQNRRPYQ CSHTTCNKTF KNPQTMRMHR KSHNTTTSAA ANAVHLAGGA  300
AAVEAISSTT TIMPSTTSCL KAGHNKKIPA RCPACKKTFV GLYELRRHFG RKHSEGEKGF  360
ACRKCGKRFH IDVDLRDHEK LCGEAIICKC GMKFAFKCNL MAHKRAHPEC QDHVATMMEQ  420
ERFVSTSDSS NEAFTATDYH SKRNQESFQE GLDSPMCFTS SSNLPMVPQS SSFLPLLFIT  480
SPFTLPI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-11WIP domain protein 5