PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0203.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 505aa    MW: 56277.8 Da    PI: 5.5571
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0203.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.3e-55301581128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL++k+++ ++++ ++i+evd++k+ePwdLp+k + +ekewyfFs +d+ky+tg r+nrat++gyWkatgkd
  Sphfalx0017s0203.2.p  30 LPPGFRFHPTDEELVTYYLARKLRSADFNT-HAISEVDLNKCEPWDLPEKSTIGEKEWYFFSLKDRKYPTGMRTNRATEAGYWKATGKD 117
                           79**************************99.88***************988899*********************************** PP

                   NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++v+s+  +++lvg+kktLvfy grapkgekt+W+mheyr 
  Sphfalx0017s0203.2.p 118 RDVVSSrpTSHLVGMKKTLVFYLGRAPKGEKTNWIMHEYRS 158
                           ****99888899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-6225191IPR003441NAC domain
PROSITE profilePS5100559.60330191IPR003441NAC domain
PfamPF023654.2E-2831157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAICVPGINN TTGGAARTQD GKEVTEPYWL PPGFRFHPTD EELVTYYLAR KLRSADFNTH  60
AISEVDLNKC EPWDLPEKST IGEKEWYFFS LKDRKYPTGM RTNRATEAGY WKATGKDRDV  120
VSSRPTSHLV GMKKTLVFYL GRAPKGEKTN WIMHEYRSEV HDDSIPSSNP QYHHQARISK  180
DEWVVCRIFQ KNAASKQPVF RSSTDMIRSS MAAYEEINDA QSSLPSQQDL EEDHSPNPTV  240
TDGGVCTDAG DYTCTHGNTS CYNCRSETAA NMQQQMNEDI SSASLPWIIR SESRAADACG  300
SVGMWSSGIN MQHNTTAQYG PASTTITQQP RQLKQEIRHH SQAMMESKIS AMKSDQNPAG  360
PDEQSYRSYR NVRTKIEPYD YCDQGEDEAQ STHRRSSAAS TDHADQYTTN NWGAAGVKAS  420
PAQQQLYEDV GQAYNDVSPM VALHSFNDPD QQSSCVSESL YCGDQHHITA GELLYNTTSN  480
RNFGFSDIMA PGAVDATSGS LWAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-543019717171NO APICAL MERISTEM PROTEIN
1ut4_B5e-543019717171NO APICAL MERISTEM PROTEIN
1ut7_A5e-543019717171NO APICAL MERISTEM PROTEIN
1ut7_B5e-543019717171NO APICAL MERISTEM PROTEIN
3swm_A5e-543019720174NAC domain-containing protein 19
3swm_B5e-543019720174NAC domain-containing protein 19
3swm_C5e-543019720174NAC domain-containing protein 19
3swm_D5e-543019720174NAC domain-containing protein 19
3swp_A5e-543019720174NAC domain-containing protein 19
3swp_B5e-543019720174NAC domain-containing protein 19
3swp_C5e-543019720174NAC domain-containing protein 19
3swp_D5e-543019720174NAC domain-containing protein 19
4dul_A5e-543019717171NAC domain-containing protein 19
4dul_B5e-543019717171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.15e-78NAC family protein