PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0016s0063.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | B3 | ||||||||
Protein Properties | Length: 935aa MW: 102151 Da PI: 6.9007 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.1 | 1.1e-11 | 221 | 320 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 f+kv + d ++g +vlpk+ +eeh ++++ ++ +++ de g++W+++++++ ++++ y+l+ Fv++ +++ gD+v F++ Sphfalx0016s0063.1.p 221 FEKVASVTDCRRTGHFVLPKRKVEEHfpPLVEPAGVWISFLDEFGKEWSFEFCFWHSKDSriYYLK-KFFPFVQSANIRGGDTVYFSRL 308 777888888899999*************99999*******************99777777768888.7889****************76 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + e++l+v+ ++ Sphfalx0016s0063.1.p 309 E-PEGTLCVSYRK 320 5.88888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-18 | 215 | 325 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-16 | 219 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.18E-10 | 220 | 320 | No hit | No description |
PROSITE profile | PS50863 | 9.277 | 221 | 322 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-7 | 221 | 322 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-8 | 221 | 320 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 9.536 | 508 | 558 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.1E-6 | 513 | 554 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 935 aa Download sequence Send to blast |
MGECCDQQDQ LLELVRLTKS GKKQGKILLQ LKSSSLGSSS NIANEEDAKG PVERQLQKSG 60 AELSGQSNDQ EHTLRGDSPT HESMSTPIDI YGSPREVMHE VESRTPHVDG KGPIADGDAA 120 NKSSSALATT ASTCQVPGGT SLLVGCVLGK RASRTEKQQI KGPPDWKLSD PKDKRLENAE 180 LREFKWTAAK NERSDNQVLL RTVLPPVVTD NPSGSTMIYL FEKVASVTDC RRTGHFVLPK 240 RKVEEHFPPL VEPAGVWISF LDEFGKEWSF EFCFWHSKDS RIYYLKKFFP FVQSANIRGG 300 DTVYFSRLEP EGTLCVSYRK QKPAATSKYV NGADICTNNL RMISSSNEVI QDLVNNGKSA 360 LDEVALRGDL PQQPALMEIN AADLENFTGR VFSKKKQRVD SPSLAYQSKV IDLLGVGKVL 420 RGKKGSIIRA ALPQVLHCVN TISGSLGPRR KRLWMELEEY IDWEGWQNLL QAPPGAVPTI 480 VSVEGHDFEE YTDPPVLMKR AFSISNLLRE GDQWVRCNNC GIWRRLPPGS LTSATCICSD 540 SARDPKRSHC SASQGLCNDE LDGLLGLFSD TEGRTDSDHE DCVEDEICTP RVPNSAFDEE 600 CCDDKAVLSS KASASVEMHS LEDETLDLSE NSKFHTSEKV SPKDVPTSSL QLPGLKEDST 660 TYDPLSLTVI KSTAYDTISP AKVPGGSSQV CGLKLDSIPL EPSAVLSAKK SKLEYDIRAR 720 NSSGSVPRSS LQPFGLKQVY SPSEAFAVLS NSNLNLDSNL PTDQKTPPQN ASGSNLQSVG 780 LRLHSTTYEV SAVLSTKEFD FNSKCSISEK ISPRSAPETS LQLSLSKESP PLALSSKSKL 840 DSSCHVSKKV LPMIVEGTSL QSSWFKQDSF PREPSAVLAM KKSSYVRNGA GKGHQLCAGC 900 DTSIGSAAQV CKKCGRLTDY GIRKRAQLTD QCQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-22 | 217 | 325 | 20 | 128 | B3 domain-containing transcription repressor VAL1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 2e-45 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0016s0063.1.p |