PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0014s0045.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 36374.3 Da PI: 7.3693

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0014s0045.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	181	235	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+ +++++ ++++ LAk+l+L rqV vWFqNrRa+ k Sphfalx0014s0045.1.p 181 RKKLRLSKEQSALLEESFKDHSTLNPKQKTALAKQLNLRPRQVEVWFQNRRARTK 235 778899***********************************************98 PP
2	HD-ZIP_I/II	126.6	1.1e-40	181	270	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++d+l+een+rL+ke +eLr Sphfalx0014s0045.1.p 181 RKKLRLSKEQSALLEESFKDHSTLNPKQKTALAKQLNLRPRQVEVWFQNRRARTKLKQMEVDCELLKTCCDNLTEENRRLQKELQELR- 268 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 +l Sphfalx0014s0045.1.p 269 AL 270 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-17	168	231	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.119	177	237	IPR001356	Homeobox domain
SMART	SM00389	3.1E-16	179	241	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-18	179	245	IPR009057	Homeodomain-like
CDD	cd00086	4.59E-17	181	238	No hit	No description
Pfam	PF00046	1.4E-15	181	235	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	212	235	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00473	230	269	No hit	No description
Pfam	PF02183	6.2E-11	237	271	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.7E-20	237	280	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MLVSEGIESL RVEMERMRAM ASSGRTTASL GLSVEFGGHG MPRKSPPVQL NLLPMRSPHS 60 DTSTDPARSS VSNPLSWQRL ASRINTGGRG HDDGEILETY SSHHHVDVVG VSPRADIDMN 120 QIPSETTDCD EAVVSSHTVS TICMKREREK LHVFDHLEQV DKGFDLSTRG GGSDDEDGTT 180 RKKLRLSKEQ SALLEESFKD HSTLNPKQKT ALAKQLNLRP RQVEVWFQNR RARTKLKQME 240 VDCELLKTCC DNLTEENRRL QKELQELRAL KVAPAPCVIA HDFYMPLPAT TLTMCPSCER 300 VATVHNPAHV FPKPAFSHFL QPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	185	TRKKLRL
2	229	237	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024379716.1	1e-119	homeobox-leucine zipper protein HAT4-like
TrEMBL	A0A2R6WPH0	1e-122	A0A2R6WPH0_MARPO; Uncharacterized protein
STRING	PP1S42_217V6.1	1e-118	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-67	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Sphfalx0014s0045.1.p