PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0013s0106.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 25746.8 Da PI: 7.7139

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0013s0106.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	84	136	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +ftk q++ Le F+ + p+ ++++LA++lg++ rqV +WFqNrRa+ k Sphfalx0013s0106.1.p 84 KLRFTKPQVRLLEHTFQTLQRPNCYQKADLARELGVQPRQVDIWFQNRRARGK 136 568************************************************88 PP
2	HD-ZIP_I/II	93.3	2.6e-30	83	163	2	82
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +k+r++k qv+lLE++F++ ++ + +K++lareLg+qprqv++WFqnrRAR k+k +++d++ L+++++ l +en++L+ Sphfalx0013s0106.1.p 83 QKLRFTKPQVRLLEHTFQTLQRPNCYQKADLARELGVQPRQVDIWFQNRRARGKAKATDSDCDILRQRCQDLIAENHQLNL 163 79***************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.601	78	138	IPR001356	Homeobox domain
SMART	SM00389	1.6E-14	80	142	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.18E-16	81	136	IPR009057	Homeodomain-like
Pfam	PF00046	8.2E-16	84	136	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.0E-18	85	141	IPR009057	Homeodomain-like
CDD	cd00086	1.46E-14	86	134	No hit	No description
PRINTS	PR00031	5.0E-6	109	118	IPR000047	Helix-turn-helix motif
PRINTS	PR00031	5.0E-6	118	134	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MADRYNNIFT TINSLALNAR QTDGAGGCLC GGRESPYSAA ASSEIQREVE FGRVLHCHDH 60 VHRGGSDGSC PRDMNDEEEG SSQKLRFTKP QVRLLEHTFQ TLQRPNCYQK ADLARELGVQ 120 PRQVDIWFQN RRARGKAKAT DSDCDILRQR CQDLIAENHQ LNLLIQSERM SYADSLLYNN 180 ARVQEQQQLS TDQVGTDQLS RSASSGHPTV QIQMILCNSC KKLKSLPPV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396326.1	5e-53	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024396327.1	5e-53	homeobox-leucine zipper protein HOX17-like
TrEMBL	A0A2K1JE05	1e-51	A0A2K1JE05_PHYPA; Uncharacterized protein
TrEMBL	A9U306	8e-52	A9U306_PHYPA; Predicted protein (Fragment)
STRING	PP1S454_12V6.1	2e-52	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-21	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Sphfalx0013s0106.1.p