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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sphfalx0013s0055.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family |
NAC |
| Protein Properties |
Length: 375aa MW: 42157.5 Da PI: 7.078 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sphfalx0013s0055.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.1 | 2.8e-52 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84
+p+GfrFhPtdeelv +yL kkv++k+++l + ike+d+yk+ePwdL+ ++++++++yfFs++dkky+tg+r+nrat++g+Wk
Sphfalx0013s0055.1.p 9 VPVGFRFHPTDEELVGYYLPKKVAAKQIDL-DLIKELDLYKLEPWDLQDlcktpDTNEKQTDYYFFSRKDKKYPTGNRANRATTAGFWK 96
599***************************.99**************9545555445566788************************** PP
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
atg+dk++++k ++l+g++ktLvfy+grap+g+ktdW+mhe+rl
Sphfalx0013s0055.1.p 97 ATGRDKPICTKVQQLIGMRKTLVFYEGRAPHGNKTDWIMHEFRL 140
******************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MTHSPTTRVP VGFRFHPTDE ELVGYYLPKK VAAKQIDLDL IKELDLYKLE PWDLQDLCKT 60
PDTNEKQTDY YFFSRKDKKY PTGNRANRAT TAGFWKATGR DKPICTKVQQ LIGMRKTLVF 120
YEGRAPHGNK TDWIMHEFRL DDGPRMPAHD DGGWVVCRVF KKTKNFKMKS DERAASFEGQ 180
FGMMPEIMSS PEILSGAGSS YPVPNNPLVH CKQETNLVTS YNVSCHDSFN AHLAQLAGMS 240
QLEAGNHAMP LSSAGFKGLV QGRNLTRKDM GGFFSEQYAL ENDHNSPSFF TAAARCNENN 300
NPAEDTGLPA LDDWGTLCES TAGKADLRFP TTARGDQSLG DVHILLQLKR QISDLYSSNC 360
EQLDPWNFNQ MYQK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-43 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-43 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-43 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-43 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-43 | 9 | 162 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-43 | 9 | 162 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
