PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Sphfalx0012s0115.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 297aa MW: 31079.5 Da PI: 5.6237

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0012s0115.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	91	136	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er R+ri +++ L+el+P++ K +Ka++L + ++Y+k Lq Sphfalx0012s0115.1.p 91 HSIAERLCRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 136 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-15	84	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.16E-11	84	140	No hit	No description
PROSITE profile	PS50888	16.24	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	88	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-7	91	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-11	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MVPHLPMNPA QTKAEHVLCH GEFSSQDAPS LGKRFREDDE DSLCENHSGI TQGNGPTSAP 60 SGFGGSPQQG LPSVGGRPRV RARRGQATDP HSIAERLCRE RIAERMKALQ ELVPNSNKTD 120 KASMLDEIID YVKFLQLQVK ILSMSRLGGA GAVAPTTSDL PAEGSNNMSA TISHSSGTPS 180 PVQDGIALTE RQVTQLLEDD MGSAMQYLQS KGLCLMPIAL ATAISTTNNS RGAQGGVGDR 240 QRTSAAGSNG GLITDGLVSS EQASKDNSRE VESINGTTSM GTHNGPECEG KLTDGP*

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394843.1	2e-98	transcription factor bHLH76-like isoform X1
Swissprot	Q9LSQ3	2e-66	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A2K1JI03	6e-97	A0A2K1JI03_PHYPA; Uncharacterized protein
STRING	PP1S209_22V6.2	1e-97	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-62	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Sphfalx0012s0115.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]