PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0009s0225.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 580aa MW: 62145.2 Da PI: 6.799

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0009s0225.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.3e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+peLHerFv+av+qLGG+++AtPk +l+lm+v+gLt++hvkSHLQkYRl Sphfalx0009s0225.2.p 48 KQRLRWSPELHERFVDAVSQLGGPDRATPKGVLRLMGVQGLTIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.471	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-32	46	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-17	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-25	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	5.3E-23	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MYHHHHHHHT KRFNGVTAAA ATNFASSANQ TSPAGGGASS GAAAAAAKQR LRWSPELHER 60 FVDAVSQLGG PDRATPKGVL RLMGVQGLTI YHVKSHLQKY RLAKYVPDSA SDGGTSKVDQ 120 KSNKKKNPAA AAQPDIILPA SDSTSGVQVD DALRMQMEVQ KRLHEQLEVQ RHLQLRIDAQ 180 SKYLKKIIEE QQRVGGSTNT TTTTTTHDDT KLHTVAAASV NERGLGRSHS LMAAAADDQE 240 PSSNEEVCIV CQDDDDDKKQ QQHDQHQIPD LRLSVVVTPG EEAGIVTDDD AYKLACSKAS 300 SNEQAGASIS PPGIRELHFE IMRSSESTTS QASSARTTTQ LQQQQQQQQQ HQSTRVAQYN 360 MGTGSLYTAS LNSTFTSSWT PSSQSPSKRT RFAGHGEIVA TGQQPGSSQS VSSELEPVVQ 420 QHDGGIMVAT CTTSSGGSDF QHQSIHLVQR VVTPGFPLSS PASNCDHSDF KLAMDFPLGG 480 GSSSSNLQQA PPANLAAALY TSQTSDLHSL TGDDLTLRPL RSSSSSLQGS HIVAMDQQWA 540 ERPSTTTAES DSASDAVRQM FSRWEENSGN AVAHSQGKT*

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MYHHHHHHHT KRFNGVTAAA ATNFASSANQ TSPAGGGASS GAAAAAAKQR LRWSPELHER  60
FVDAVSQLGG PDRATPKGVL RLMGVQGLTI YHVKSHLQKY RLAKYVPDSA SDGGTSKVDQ  120
KSNKKKNPAA AAQPDIILPA SDSTSGVQVD DALRMQMEVQ KRLHEQLEVQ RHLQLRIDAQ  180
SKYLKKIIEE QQRVGGSTNT TTTTTTHDDT KLHTVAAASV NERGLGRSHS LMAAAADDQE  240
PSSNEEVCIV CQDDDDDKKQ QQHDQHQIPD LRLSVVVTPG EEAGIVTDDD AYKLACSKAS  300
SNEQAGASIS PPGIRELHFE IMRSSESTTS QASSARTTTQ LQQQQQQQQQ HQSTRVAQYN  360
MGTGSLYTAS LNSTFTSSWT PSSQSPSKRT RFAGHGEIVA TGQQPGSSQS VSSELEPVVQ  420
QHDGGIMVAT CTTSSGGSDF QHQSIHLVQR VVTPGFPLSS PASNCDHSDF KLAMDFPLGG  480
GSSSSNLQQA PPANLAAALY TSQTSDLHSL TGDDLTLRPL RSSSSSLQGS HIVAMDQQWA  540
ERPSTTTAES DSASDAVRQM FSRWEENSGN AVAHSQGKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0009s0225.2.p