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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sphfalx0008s0179.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family |
LSD |
| Protein Properties |
Length: 207aa MW: 21677.3 Da PI: 7.9642 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sphfalx0008s0179.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 40.6 | 4.3e-13 | 15 | 39 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL YP GA++VRCalC V
Sphfalx0008s0179.1.p 15 CGGCRTLLVYPQGASNVRCALCSSV 39
**********************876 PP
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| 2 | zf-LSD1 | 43.6 | 4.8e-14 | 55 | 79 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C gCrtlL+Y rGA+sV+C++C+tV
Sphfalx0008s0179.1.p 55 CAGCRTLLMYMRGATSVQCSCCHTV 79
************************9 PP
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| 3 | zf-LSD1 | 41.2 | 2.6e-13 | 101 | 125 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+t+L+Y +GA sV+CalC+ V
Sphfalx0008s0179.1.p 101 CGGCGTTLMYAYGAQSVKCALCQYV 125
***********************87 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MPYQLMQGVQ GQLICGGCRT LLVYPQGASN VRCALCSSVT TVPPHGAAEM AQLVCAGCRT 60
LLMYMRGATS VQCSCCHTVN LAMELAPPPA AAAAAMAHIN CGGCGTTLMY AYGAQSVKCA 120
LCQYVTSIAM PPNMRIPLPP TQQQQQQLRP IVPIPPQQRL LPPPVSVASN TQSHHTQTVV 180
VENPMTLDES GKLVSNVAVG VTTDTN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
| Publications
? help Back to Top |
- Spedaletti V, et al.
Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
Biochemistry, 2008. 47(17): p. 4936-47
[PMID:18393445] - Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
Plant Cell Rep., 2016. 35(3): p. 527-39
[PMID:26754794] - Czarnocka W, et al.
The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
Plant Cell Environ., 2017. 40(11): p. 2644-2662
[PMID:28555890] - Bernacki MJ, et al.
LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
Physiol Plant, 2019. 165(2): p. 369-382
[PMID:30461017]
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