PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0008s0020.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 1140aa MW: 124075 Da PI: 6.2356

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0008s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.9e-28	798	848	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++ l++l++yF++++kdAA+++gvc+T+LKriCR++GI+RWP+Rki+++ Sphfalx0008s0020.1.p 798 EKTVALSVLQQYFAGSLKDAARSIGVCPTTLKRICREHGISRWPSRKINKV 848 7999*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.62	782	868	IPR003035	RWP-RK domain
Pfam	PF02042	8.7E-25	801	848	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.29E-18	1030	1115	No hit	No description
SMART	SM00666	9.6E-14	1033	1115	IPR000270	PB1 domain
PROSITE profile	PS51745	18.398	1033	1115	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.1E-19	1034	1113	No hit	No description
Pfam	PF00564	5.7E-13	1034	1113	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1140 aa Download sequence Send to blast
MDVSQANERN ILQSCIPQWR SADFKAFGQQ QLSPPPPRGG GVSSSYSAGG GGECKLEIMD 60 DTMILCELMD FDPLPGEAWI MANNQTDLSA PFMNSSQSLF ASAAATSCPP CGTVINSTYL 120 LEALDEQSPA ILAQQGEPQA ALCSETRLPS PEFTDSYFSP RGSDIGSFLS SQMPRTDEKT 180 EKTVSEAKLC RGLTRPAKGC ADQGPDGRHC FETESFIDSK STLVQCSKQG TDGNPGRRRG 240 PALTPEGRMT RSGRTDSAPF SLRDRLLQAV RYIGRCRPDV LAQVWMPVTH ANKTTCLTTR 300 DQPYVLELKN HQLWSFRSVS EKYDFPTAAD KESAAGGGGG GRGGGFSCDL PGRVFLSQAP 360 EWTPNVQLYS SNEYVRVQEA QRYDVRGTAA VPVLDPVSRR SLAVIELVSK SEKVEFRPEI 420 DVVCKALQAV DLACPDGLDP AVPGEQMRLQ SRQAVVAEIA EVLTAVCETH ELPLAQTWVP 480 VSQYGNAKVI VHNDSNRVQF DVDETCNCHT SSSKSTMSLH TGDGPCYVSD GHLWGFRRAC 540 LEHTIERGQG VPGKAFSSNQ PVFDKDVKSY SKTEYPLGHY AKWFGLSAAV AIRLRSIHTG 600 NDDFILEFFL PPSCVESQQQ QLILNSLSIT LQHVCRSLRT VTDQELEEEQ EAVAVAVDTE 660 ANCKPLKLCS AKEEQDVDLV PGCGLGPATP VLTHKVSPSS LDQQHHQQRL HLQTREHPVQ 720 YQHQLDHHLG NTETNDLIQN QEPSQLQQVQ QSYQSNQLSL GAVGAGVTNM GCAFASTCSG 780 QDATIHKRRL DRRRGMTEKT VALSVLQQYF AGSLKDAARS IGVCPTTLKR ICREHGISRW 840 PSRKINKVSR SLRKLQGVID SVQGANGILH INTLMGNNAS VAGVTGIHIE KDHPPVHGNW 900 SVSLATHFPI DSDFNKEHLV TSQTPADLLK VAQGEENKNP RCIPGACTFT ALRAGQLSGD 960 REQRPASPSN YAFGEGGDEG KDGAGCPGLS AFDPRQFDAS PGHGISDCSS PSSGIGDTTK 1020 KIIWPQRIDT TSAITVKATV GTDTVRFKFP SGSGYLDLRD HIQCRLKLES RSFDLKYLDD 1080 DEEWMLLASE ADLQECLQVT QGTQQRAIKL LVQCSTGSGS CITSSISTNV EEKPSKMSS*

Sequence ? help Back to Top

Protein Sequence Length: 1140 aa Download sequence Send to blast

MDVSQANERN ILQSCIPQWR SADFKAFGQQ QLSPPPPRGG GVSSSYSAGG GGECKLEIMD  60
DTMILCELMD FDPLPGEAWI MANNQTDLSA PFMNSSQSLF ASAAATSCPP CGTVINSTYL  120
LEALDEQSPA ILAQQGEPQA ALCSETRLPS PEFTDSYFSP RGSDIGSFLS SQMPRTDEKT  180
EKTVSEAKLC RGLTRPAKGC ADQGPDGRHC FETESFIDSK STLVQCSKQG TDGNPGRRRG  240
PALTPEGRMT RSGRTDSAPF SLRDRLLQAV RYIGRCRPDV LAQVWMPVTH ANKTTCLTTR  300
DQPYVLELKN HQLWSFRSVS EKYDFPTAAD KESAAGGGGG GRGGGFSCDL PGRVFLSQAP  360
EWTPNVQLYS SNEYVRVQEA QRYDVRGTAA VPVLDPVSRR SLAVIELVSK SEKVEFRPEI  420
DVVCKALQAV DLACPDGLDP AVPGEQMRLQ SRQAVVAEIA EVLTAVCETH ELPLAQTWVP  480
VSQYGNAKVI VHNDSNRVQF DVDETCNCHT SSSKSTMSLH TGDGPCYVSD GHLWGFRRAC  540
LEHTIERGQG VPGKAFSSNQ PVFDKDVKSY SKTEYPLGHY AKWFGLSAAV AIRLRSIHTG  600
NDDFILEFFL PPSCVESQQQ QLILNSLSIT LQHVCRSLRT VTDQELEEEQ EAVAVAVDTE  660
ANCKPLKLCS AKEEQDVDLV PGCGLGPATP VLTHKVSPSS LDQQHHQQRL HLQTREHPVQ  720
YQHQLDHHLG NTETNDLIQN QEPSQLQQVQ QSYQSNQLSL GAVGAGVTNM GCAFASTCSG  780
QDATIHKRRL DRRRGMTEKT VALSVLQQYF AGSLKDAARS IGVCPTTLKR ICREHGISRW  840
PSRKINKVSR SLRKLQGVID SVQGANGILH INTLMGNNAS VAGVTGIHIE KDHPPVHGNW  900
SVSLATHFPI DSDFNKEHLV TSQTPADLLK VAQGEENKNP RCIPGACTFT ALRAGQLSGD  960
REQRPASPSN YAFGEGGDEG KDGAGCPGLS AFDPRQFDAS PGHGISDCSS PSSGIGDTTK  1020
KIIWPQRIDT TSAITVKATV GTDTVRFKFP SGSGYLDLRD HIQCRLKLES RSFDLKYLDD  1080
DEEWMLLASE ADLQECLQVT QGTQQRAIKL LVQCSTGSGS CITSSISTNV EEKPSKMSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397373.1	0.0	protein NLP1-like isoform X1
Refseq	XP_024397374.1	0.0	protein NLP1-like isoform X2
STRING	PP1S250_18V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-82	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Sphfalx0008s0020.1.p