PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0209.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 609aa    MW: 67267.1 Da    PI: 6.6569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0209.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038398422123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           + C+   C+k+F+    L  H r+H
  Sphfalx0007s0209.1.p 398 FACNinGCNKRFKEAVALYAHARVH 422
                           789999*****************99 PP
2zf-C2H211.80.00077427451123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y C+   C ksFs ks LkrH   H
  Sphfalx0007s0209.1.p 427 YICHydGCIKSFSEKSKLKRHFLIH 451
                           89*******************8877 PP
3zf-C2H217.89e-06457481123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++C    Cgk Fs   nL++H++tH
  Sphfalx0007s0209.1.p 457 FPCLyeGCGKAFSLDFNLRSHMKTH 481
                           6788889*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.54E-7397451No hitNo description
Gene3DG3DSA:3.30.160.604.3E-6398423IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.325398422IPR007087Zinc finger, C2H2
SMARTSM003550.0065398422IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280400422IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-12425447IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.69427456IPR007087Zinc finger, C2H2
SMARTSM003550.0082427451IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280429451IPR007087Zinc finger, C2H2
SuperFamilySSF576677.97E-15437484No hitNo description
Gene3DG3DSA:3.30.160.603.5E-21448484IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.882457486IPR007087Zinc finger, C2H2
SMARTSM003550.0052457481IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280459481IPR007087Zinc finger, C2H2
SMARTSM003550.24486511IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280488511IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4488507IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDLPVFTSHS LVSTPAAGLE RVAVEGGSAL RNIANNYVEE SEGSSSSEEQ GVTENGHHGQ  60
EEKDIDYGRL LWHASVHEGG KSICQNHNAE DALNSITKLE NSAVMSGDKL SKNGLDKPEN  120
ERETNLIRPT ALVTERGLVC LENGVANHMD KEARQTISCK QGDGGKERSG TLIAPRNCYV  180
ETTEDAELSE EEDEHHIEDR EGNAAAGEVF GGTLGFDEKS LIKSQSCPCT ESGDVASPAP  240
IYFRRRKGCG GGPSGFDGHQ ASCFLAAAAA PHTPQFEEPR AVRCNHGIKR RFPGDESDDC  300
LPKHIRVRSI ASVYGNVSQP IEGKDADFDG GMKSAPMQKH VRLRKSGIPE HLLPPPPQED  360
QIEEQSPAAT LWNRSSVEAV SQLEGSKCPG LGRNGQMFAC NINGCNKRFK EAVALYAHAR  420
VHGDRPYICH YDGCIKSFSE KSKLKRHFLI HTGEKPFPCL YEGCGKAFSL DFNLRSHMKT  480
HTGDYHECPY DGCQKHYCQE YKLRAHISKE HSRLTRGVVA KFTTHAGSNT KAGAKGCISQ  540
DATRAVKKRG ELLADLELQL ARLRKLKEER VNRIVELDEK REREIRGLTY TEQELEKLDR  600
DRRLLEED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-323965074117PROTEIN (YY1 ZINC FINGER DOMAIN)
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1JPJ44e-98A0A2K1JPJ4_PHYPA; Uncharacterized protein
STRINGPP1S577_1V6.14e-96(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-42C2H2 family protein