PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0004s0089.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 703aa    MW: 76783.7 Da    PI: 4.5419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0004s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043515537123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C+ C+k Fs++  L  H++ H
  Sphfalx0004s0089.1.p 515 YDCHFCKKEFSSSQALGGHQNAH 537
                           88******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.89E-6512541No hitNo description
PROSITE profilePS5015711.697515542IPR007087Zinc finger, C2H2
PROSITE patternPS000280517537IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010090Biological Processtrichome morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MTNLDVEFFS LLRRRRSSGS RKQGYEEEEG DDEEAFCCSE SENSCDDGQQ EQEEYEIAAS  60
MSFSSKRHRE EEEEEEKEEA HGRGGREFEE RSKLHLAPHS VLLAVGLQQQ QSADDEEEQK  120
EGDEEEQEQE EPLLSHKSCV QLDSRITMTT GKQVDRRRKE LKNLGQCSEA FLEPSLLACA  180
RHRGGSSQIS ISGDKEEEEE DAFQQLPLEE QDADGDAKMQ KDSILACGAE RGKLDHDDAV  240
GKETQGLNAS VVPSRGDDQS TLQQQQLPRA ISFFKEIKEN SSADLDLGGC FFRDDVGEEE  300
EEEYTSEQYC PDPSSCSSPR ASSARRCRRD HQDFVRKTGG GQEEVGSRGA QASCGGIDFL  360
QLETRKPWLS MGGGAQQNRV AGGGGGGEAV RLFGFEMNWR SMSGRSKDKE EEGCTENIGR  420
SNREKEQQQQ QQKGSQQSLP SCSSEGALDI DTVPEDAGEE EEAAVGVQPS KDSGVEAGKL  480
QCSSMSMPSI TNQPTEGISV CSGSTRVTSK ENRKYDCHFC KKEFSSSQAL GGHQNAHKRE  540
RKEDRRAQLQ AHRMAAAAAA AAAAANAHRD CGEMAGYSTT QHSLLPGSQL LQQQHPHGSH  600
LFAPPPGSGL IVPGQAYPHP NFSLQGCVNP PPMPEGMQAP PPGSIFYAGP VAIGFPGSRP  660
SFPTVFGDLV QYSDTIDYVQ YHPSACFQQV IHGFDTTVSN SG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-12C2H2 family protein