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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sphfalx0003s0362.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family | C3H | ||||||||
| Protein Properties | Length: 2031aa MW: 220784 Da PI: 6.7351 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 31.1 | 4e-10 | 1384 | 1408 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC+ f G C+yG+rC++aHg
Sphfalx0003s0362.1.p 1384 YKTRLCNKFNN-GGCPYGARCRYAHG 1408
9**********.*************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF10440 | 2.1E-8 | 6 | 62 | IPR018848 | WIYLD domain |
| PROSITE profile | PS50102 | 10.565 | 939 | 1036 | IPR000504 | RNA recognition motif domain |
| Gene3D | G3DSA:3.30.70.330 | 3.3E-5 | 972 | 1077 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| SuperFamily | SSF54928 | 5.08E-5 | 1186 | 1252 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| Gene3D | G3DSA:3.30.70.330 | 3.3E-5 | 1223 | 1253 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| SuperFamily | SSF90229 | 3.3E-7 | 1381 | 1412 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-14 | 1382 | 1412 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.835 | 1383 | 1410 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-7 | 1383 | 1409 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-7 | 1384 | 1408 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000166 | Molecular Function | nucleotide binding | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2031 aa Download sequence Send to blast |
MKADYKERLK IVLQVLQPLQ FSKALIIRTV RNLLNVYGVE AGWSYIEEDE YKNVLNCIVA 60 ERNEKRGQKI SHAPTQTESA GETQHVHESN RRFGKTTGPT QAIHVSPAAE MSTENCAPSH 120 HEDPDSPDIH QHQRWLWSQK IGIPPLACFR ETSPVLGAEE PEVLLGSLGS PGNVTSDTEK 180 SHEDNVPSND KPNREVQDSW DADGSNFPKP SKGRCRIRKA GRSGALLEPR DEAAPAQELM 240 HVSPVSDFEV EGQNQQDLCQ DVSRSAEKLK NDKGGIGEAD WTPKNFFRKV VSDSNQAPIS 300 CQSQSCEQEG GVANDSHDDM DMRGKLGGQI KTRDPLDHRD LPTVKRIVGV KGKRPDQIFP 360 VKKVLNSESD DLAATPLPPK KARLGANAVD IQSCPPVVGG KVPKGSGCGL LSMDSEEKKM 420 VPGNKSSTKL QGVATKARGD QAEGDSLFGI PGVATALVIT RDGTATKEID VGRTTAFKLG 480 GKKGSSSFLQ RQKRSVTIAE DFSNRHISHV DTWSLEACLT RAPPLGSPPS GLRFNAKVSA 540 VTNCSSDHDQ LLVGQGANAG ELVIDPTYTV TKPDTHTVLP LNKVPQPSLS GEVSNHETAR 600 AAGSGIAGSS SNILPELDKY NMQLPSPLSV SELDEAPSPE LPPGFANQIS HKRDLVAAVA 660 LHQPGCAISN LQKLQEHKDF PERAIPGHVW GPVSQVRPTA PILLDNSCTA SAAPCTSGPL 720 QPQSPLLAQS SPIENPSGKL ASVLRPINTS VKSELTPPGP GFQIQSSIPP FMPPRLPPNQ 780 FPSVAGMVSP DLADSLPQRP LPPLPSGGTQ LKQECSFGPL HPPGPSNVFP PEASCLSSPR 840 PTSPHSNNGT QQSSSAIPSG WPSSVPSVPP SQLFPPGMEP VTSMTVTGTP LGSRLSSTAP 900 SPTSLISNSF PPPMGTNSAI PSVGHKGFDA RRDAREHAKS IFVGNIPVGL VNTILVIREA 960 LEAYFKPLEF VPAKSAEIQH ISLYERSTGS YAFAQFSSEV FARIVLDACQ VKSMPLQVNG 1020 VQLSVGRNLK AEMVPPMPRE RMFKGDRVLD PAKILYVGNL PEQWRSEQLL QKQFSEILGG 1080 SNPGADSNFL SEIYILPECV DVYLELSSDV VADALVYKCI KDSKLLESMG DSVFICRHPK 1140 FVPLFALASK STSCTLAIPN QNVEKPLPKD SKLAAEEELA SRWQSTLYVG NLPLTAEAYN 1200 VHDLREVFDR MLCHTLEDKP VVRWVKAVTW PPGRHYAHVE FNSESAANAI MDAYIEQTAE 1260 FCLNDAAFCM FRHQKYVRPG AVYKTTNHGV LNLNLTVEVN QEKKSIKNLS LESQSSEQCL 1320 DALELDGEEG DESLDESVQA VHMDMKPDEM AAAVHAVHAV PALIKGVNEV TEQGNVGGWS 1380 THLYKTRLCN KFNNGGCPYG ARCRYAHGVE ELLRPAPPQM PHAQGRRSAV TPPLGSSSST 1440 GLTTDFTGRQ DTTDTGDEYV DPKSVICVRG VADGLTSFSL KGAMNELFER TLKTTGVLEF 1500 GKHVVRYSQF KDNSKQALVT LLNVEAPTAI LSVVKPLKIA GQPLVILPWS NMQQQKLQPL 1560 PKVNAGQPGF QPTFNLGDTH DVLSSSPGNS RAPHGWLPPS WSGPEQPWSV HPPGLSSVEC 1620 PPHVGQFGPP PQTGMVPLPF LPTQGQPDFG RPPLPSGPLC HPSFGPHNGI RPPPPWTLSP 1680 PIPSIHHLQS PGGDGWPAPP SAWVEPHHGL HPGNFGWRHN EGVLHPDLIS PPLQQHRDGV 1740 HRMHFSHEDT KFRAELLCQS SNKIDKNTGG WLEDDDDEEP GMPASEPATG DGDRRGVDPE 1800 GGRIISEEAS ASNVDPFQHK QVDSGPKAEL ATSVSDHVHP ATSLSDVSRS GKQTPDIGNV 1860 SFADQNPISS QEPISSRDSH WVEDGELRRE GNKRKRETDR SGIEAKGHSS HDNRMTKHKL 1920 HKEADWDLGD RGYEAKDQSR KSSRDREVGH SSIRQKPHHD RRDPPQESDG RDASWHRPSR 1980 SSGRRWDVEP YEKSDRESRR KSDSGNHKTN STSKLDRGTI DDRSRSRRHN * |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G32360.1 | 1e-06 | C3H family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Sphfalx0003s0362.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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