PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0003s0052.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 537aa MW: 57293.3 Da PI: 5.7368

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0003s0052.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	462	507	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +AveY+k+Lq Sphfalx0003s0052.2.p 462 SIAERVRRTKISERMKRLQDLVPNM----DKQTNTSDMLDEAVEYVKQLQ 507 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.691	456	506	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-16	459	524	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.53E-12	460	511	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-16	461	522	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	462	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-9	462	507	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MSNGDEEFSA MLEGDHHNLA QMTLASVMAL RSSPALVGMG SSGAGAEQMQ GSPFISHYSS 60 SLPGGFSISS SDQGRQLASA TRWGTNLSGG GGGVHASDVL EAAQAVRVTS RSSALLQQQQ 120 PSWPSIAEQE KVELDSKNQI MKLAANTSHL NNSRFNPISY ATSLGSNPPS RLLSGGGLQR 180 YHSAPSSLLQ SLTDCHEDAF SQVSSPLGGN TGGNRDSLTD NHVAASFCPE NHNLTSITEG 240 VVQQMETDDK LSNAAHFSHQ YNQFLSPPTK SEKQASFVLN PVFGGDPDDR LGNQRQLGRD 300 NLLRQSSLPA DWLTVLQDSI DETIDLSSQF PSITSPDVSL SGATSEETGA GASGKSSIYS 360 RDDSFLVSDT ISGGLWSSPT SPVSLIGGKR LHGVLGETTV DTAVSGKGSL RGRLGEPGTL 420 IRHSSLPATI NRPTSPVFDD LDDISVPYQT RAKRGCATHP RSIAERVRRT KISERMKRLQ 480 DLVPNMDKQT NTSDMLDEAV EYVKQLQRQV KELSDTAAQL RELQGQRLTA EGKESL*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MSNGDEEFSA MLEGDHHNLA QMTLASVMAL RSSPALVGMG SSGAGAEQMQ GSPFISHYSS  60
SLPGGFSISS SDQGRQLASA TRWGTNLSGG GGGVHASDVL EAAQAVRVTS RSSALLQQQQ  120
PSWPSIAEQE KVELDSKNQI MKLAANTSHL NNSRFNPISY ATSLGSNPPS RLLSGGGLQR  180
YHSAPSSLLQ SLTDCHEDAF SQVSSPLGGN TGGNRDSLTD NHVAASFCPE NHNLTSITEG  240
VVQQMETDDK LSNAAHFSHQ YNQFLSPPTK SEKQASFVLN PVFGGDPDDR LGNQRQLGRD  300
NLLRQSSLPA DWLTVLQDSI DETIDLSSQF PSITSPDVSL SGATSEETGA GASGKSSIYS  360
RDDSFLVSDT ISGGLWSSPT SPVSLIGGKR LHGVLGETTV DTAVSGKGSL RGRLGEPGTL  420
IRHSSLPATI NRPTSPVFDD LDDISVPYQT RAKRGCATHP RSIAERVRRT KISERMKRLQ  480
DLVPNMDKQT NTSDMLDEAV EYVKQLQRQV KELSDTAAQL RELQGQRLTA EGKESL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0003s0052.2.p