PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0003s0052.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 538aa MW: 57364.3 Da PI: 5.7368

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0003s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	463	508	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +AveY+k+Lq Sphfalx0003s0052.1.p 463 SIAERVRRTKISERMKRLQDLVPNM----DKQTNTSDMLDEAVEYVKQLQ 508 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.691	457	507	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-16	460	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.55E-12	461	512	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-16	462	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	463	513	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-9	463	508	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MSNGDEEFSA MLEGDHHNLA QMTLASVMAL RSSPALVGMG SSGAGAEQMQ GSPFISHYSS 60 SLPGGFSISS SDQGRQLASA TRWGTNLSGG GGGVHASDVL EAAQAVRVTS RSSALLQQQQ 120 PSWPSIAEQE KVELDSKNQI MKLAANTSHL NNSRFNPISY ATSLGSNPPS RLLSGGGLQR 180 YHSAPSSLLQ SLTDCHEDAF SQVSSPLGGN TGGNRDSLTD NHVAASFCPE NHNLTSITEG 240 VVQQMETDDK LSNAAHFSHQ YNQFLSPPTK SEKQASFVLN PVFGGDPDAD RLGNQRQLGR 300 DNLLRQSSLP ADWLTVLQDS IDETIDLSSQ FPSITSPDVS LSGATSEETG AGASGKSSIY 360 SRDDSFLVSD TISGGLWSSP TSPVSLIGGK RLHGVLGETT VDTAVSGKGS LRGRLGEPGT 420 LIRHSSLPAT INRPTSPVFD DLDDISVPYQ TRAKRGCATH PRSIAERVRR TKISERMKRL 480 QDLVPNMDKQ TNTSDMLDEA VEYVKQLQRQ VKELSDTAAQ LRELQGQRLT AEGKESL*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MSNGDEEFSA MLEGDHHNLA QMTLASVMAL RSSPALVGMG SSGAGAEQMQ GSPFISHYSS  60
SLPGGFSISS SDQGRQLASA TRWGTNLSGG GGGVHASDVL EAAQAVRVTS RSSALLQQQQ  120
PSWPSIAEQE KVELDSKNQI MKLAANTSHL NNSRFNPISY ATSLGSNPPS RLLSGGGLQR  180
YHSAPSSLLQ SLTDCHEDAF SQVSSPLGGN TGGNRDSLTD NHVAASFCPE NHNLTSITEG  240
VVQQMETDDK LSNAAHFSHQ YNQFLSPPTK SEKQASFVLN PVFGGDPDAD RLGNQRQLGR  300
DNLLRQSSLP ADWLTVLQDS IDETIDLSSQ FPSITSPDVS LSGATSEETG AGASGKSSIY  360
SRDDSFLVSD TISGGLWSSP TSPVSLIGGK RLHGVLGETT VDTAVSGKGS LRGRLGEPGT  420
LIRHSSLPAT INRPTSPVFD DLDDISVPYQ TRAKRGCATH PRSIAERVRR TKISERMKRL  480
QDLVPNMDKQ TNTSDMLDEA VEYVKQLQRQ VKELSDTAAQ LRELQGQRLT AEGKESL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0003s0052.1.p