PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0002s0095.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 501aa MW: 54632.1 Da PI: 6.3645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0002s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.4e-11	437	482	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++++P+ k + +e+L +AveY+ksLq Sphfalx0002s0095.1.p 437 SIAERVRRTRISDRMKKLQQVVPNM----VKQTNTSEMLDEAVEYVKSLQ 482 689*******************7....4679**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.195	431	481	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-13	434	496	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-10	435	485	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-13	436	496	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	437	487	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-8	437	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MKDSSPQVAA AAAARPGRTG HPSPSQQQQQ RWTPLLQLAA GEEKTVFQQQ QLELGTVKSE 60 VIDSNINMGR RFSDYPMNVG HVILECPAPP PPPPVHHGST SFLNPPALLM PTTSTNGFQR 120 YHSAPSSLLH SLCSLDNYED LHHGSFPQAS GTALDSCRSR ISTSLMPPGF FSDGHLTAIT 180 EQMIDTSDQK LTNTGTATNL ETEYDQYMCN MNPTNFGRRA ALSAAAMIEQ QSGKSELANW 240 QVPSDDVLLS EDPFETMFPS LKNRSSHNNN AHQLRDAARQ LDVDESNTCS PTTLGMAGHS 300 MMSSEDQESN ISGTSEDANY GSYGSQAPAM FSRDDSFLLS DTLTSLEFLP TSHTGDMSGK 360 HHYGIELGES KMSCETTRGP MRSRPAGAVA GSLKRHMSLP VAAKTEMKSG LEDVAFVVSV 420 PSYGTRAKRG CATHPRSIAE RVRRTRISDR MKKLQQVVPN MVKQTNTSEM LDEAVEYVKS 480 LQKMVLELTN TVAELRGQNF *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MKDSSPQVAA AAAARPGRTG HPSPSQQQQQ RWTPLLQLAA GEEKTVFQQQ QLELGTVKSE  60
VIDSNINMGR RFSDYPMNVG HVILECPAPP PPPPVHHGST SFLNPPALLM PTTSTNGFQR  120
YHSAPSSLLH SLCSLDNYED LHHGSFPQAS GTALDSCRSR ISTSLMPPGF FSDGHLTAIT  180
EQMIDTSDQK LTNTGTATNL ETEYDQYMCN MNPTNFGRRA ALSAAAMIEQ QSGKSELANW  240
QVPSDDVLLS EDPFETMFPS LKNRSSHNNN AHQLRDAARQ LDVDESNTCS PTTLGMAGHS  300
MMSSEDQESN ISGTSEDANY GSYGSQAPAM FSRDDSFLLS DTLTSLEFLP TSHTGDMSGK  360
HHYGIELGES KMSCETTRGP MRSRPAGAVA GSLKRHMSLP VAAKTEMKSG LEDVAFVVSV  420
PSYGTRAKRG CATHPRSIAE RVRRTRISDR MKKLQQVVPN MVKQTNTSEM LDEAVEYVKS  480
LQKMVLELTN TVAELRGQNF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09180.1	8e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0002s0095.1.p