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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sphfalx0001s0415.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 388aa MW: 43179.4 Da PI: 8.152 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sphfalx0001s0415.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.7 | 3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien +nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++gkl y++
Sphfalx0001s0415.1.p 9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDVALIMFSPSGKLTQYCN 59
68***********************************************85 PP
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| 2 | K-box | 15.5 | 7.4e-07 | 135 | 202 | 10 | 74 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGed..Les.LslkeLqqLeqqLekslkkiRskKnelll 74
++ + lq e++kL e + Lq+ R +l ++ +++ s+++L ++e++Le++l+++R +K+ +
Sphfalx0001s0415.1.p 135 KSYEVGVLQDEVKKLTHEKDLLQQRARLFLADEqiIQTvTSVQQLANMETELEQALERVRRHKSLVTN 202
455566799**************9999988765444542589*******************9986643 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 29.31 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 3.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.23E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.49E-38 | 2 | 71 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 7.642 | 139 | 229 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 2.6E-5 | 141 | 201 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDVALIMFSP SGKLTQYCNC 60
SIEDVITRFA NLPLHERNKS FEDMLTRFAN FHMHHDRNKY TRKSENLEYL HKALKKLSGE 120
KDLALNQQLP SGSSKSYEVG VLQDEVKKLT HEKDLLQQRA RLFLADEQII QTVTSVQQLA 180
NMETELEQAL ERVRRHKSLV TNAYDQAANA MQRQHEFMGN MQLMAMQRGG AMTGAQQAAA 240
AASSFLQWNM PEQQRDQPAI LQDFMEHQSN ATSLLPAQMS RELGSNSGLA STSGFFPAAS 300
QTKLEGGNSM VAFAAATTSS SSGATAAAAE GVAETFLSPT EQQQQHGSNA SVPWHSSAHQ 360
SHHHHQQAYS GSQYPTAYFS QNPDAWK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3mu6_A | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 2e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 6byy_A | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| 6byy_B | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| 6byy_C | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| 6byy_D | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ334458 | 1e-154 | GQ334458.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS4) gene, complete cds. |
