PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0238.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 730aa    MW: 76337.6 Da    PI: 8.3078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32371428260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK+vkgse+prsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+g+Hnh+k
  Sphfalx0001s0238.1.p 371 EDGYNWRKYGQKQVKGSEYPRSYYKCTQANCPMKKKVERSH-DGQVTEIVYKGDHNHSK 428
                           7****************************************.***************85 PP

2WRKY101.84e-32549607159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct  gC v+k+ver+++d k+v++tYeg+Hnh+
  Sphfalx0001s0238.1.p 549 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCIVRKHVERASTDVKAVITTYEGKHNHD 607
                           59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.83E-25364429IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-29366429IPR003657WRKY domain
SMARTSM007743.0E-35370428IPR003657WRKY domain
PfamPF031062.6E-25371426IPR003657WRKY domain
PROSITE profilePS5081124.111371429IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-36534609IPR003657WRKY domain
SuperFamilySSF1182901.57E-28541609IPR003657WRKY domain
PROSITE profilePS5081138.033544609IPR003657WRKY domain
SMARTSM007745.4E-37549608IPR003657WRKY domain
PfamPF031062.0E-24550607IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MEGEKRGGGG AGVAGDVGGG VMLRKPTPSR PQVTVAMRGA YTSEATVAGV YRTIESPMSS  60
MVSGFLADPE QEMDTRSFSH LLAGAIAAPA SGGDGGEDKG ATADSGTGSP SLRVSSPGGA  120
SVGASGSFAD RLAARGAAHT AAGFASAEAA GAGGGGGGVS MPPSSVQFRS LPPSRIPIPR  180
SAGYLTIPPG LSPTTLFDAS PVLLSTSQSE PSPTTGTFPL APAFFNSGSS KPILGMDPSK  240
DRSADQGFVF KPFVKPVPQN SMSRLAGLST FGAFQQQAHV LTEMQQAHAQ QTLPSSSTLS  300
ASARVPLVST AMSSGVPLNV SSSQAAQVQA HAMQQQQQQN GPDLEQTSQG SEQDHQLPPT  360
AMTVFPERPS EDGYNWRKYG QKQVKGSEYP RSYYKCTQAN CPMKKKVERS HDGQVTEIVY  420
KGDHNHSKPQ PTRRLALSGG QVGAGFLSSV KNEGGGAEQD IMDSSRAGRL APSLSFTLGG  480
SGVLEPSSSS SSDDEGEEGS KLSVEDGDDD EPDSKRRRKD KKVKEVIPAS RTIREPRVVV  540
QTTSDVDILD DGYRWRKYGQ KVVKGNPHPR SYYKCTNVGC IVRKHVERAS TDVKAVITTY  600
EGKHNHDVPA ARNSGSDTLA QNTAPVIPAA TSLQDQGARF GNRNFGQLLD DGSFKREKSA  660
ADVDSGMRVG MVAANGEVPV SASLGHSDLG DGRAVQARDA FIHRGNFGAR PKQEQPESTS  720
QTSLIPSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-38371610878Probable WRKY transcription factor 4
2lex_A9e-38371610878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1515520RRRKDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368161.10.0WRKY transcription factor SUSIBA2-like isoform X3
TrEMBLA0A2K1L2S70.0A0A2K1L2S7_PHYPA; Uncharacterized protein
STRINGPP1S135_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.19e-81WRKY DNA-binding protein 33