PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0001s0238.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | WRKY | ||||||||
Protein Properties | Length: 730aa MW: 76337.6 Da PI: 8.3078 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 371 | 428 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+g+Hnh+k Sphfalx0001s0238.1.p 371 EDGYNWRKYGQKQVKGSEYPRSYYKCTQANCPMKKKVERSH-DGQVTEIVYKGDHNHSK 428 7****************************************.***************85 PP | |||||||
2 | WRKY | 101.8 | 4e-32 | 549 | 607 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct gC v+k+ver+++d k+v++tYeg+Hnh+ Sphfalx0001s0238.1.p 549 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCIVRKHVERASTDVKAVITTYEGKHNHD 607 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.83E-25 | 364 | 429 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.1E-29 | 366 | 429 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-35 | 370 | 428 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 371 | 426 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.111 | 371 | 429 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-36 | 534 | 609 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 541 | 609 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.033 | 544 | 609 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-37 | 549 | 608 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 550 | 607 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MEGEKRGGGG AGVAGDVGGG VMLRKPTPSR PQVTVAMRGA YTSEATVAGV YRTIESPMSS 60 MVSGFLADPE QEMDTRSFSH LLAGAIAAPA SGGDGGEDKG ATADSGTGSP SLRVSSPGGA 120 SVGASGSFAD RLAARGAAHT AAGFASAEAA GAGGGGGGVS MPPSSVQFRS LPPSRIPIPR 180 SAGYLTIPPG LSPTTLFDAS PVLLSTSQSE PSPTTGTFPL APAFFNSGSS KPILGMDPSK 240 DRSADQGFVF KPFVKPVPQN SMSRLAGLST FGAFQQQAHV LTEMQQAHAQ QTLPSSSTLS 300 ASARVPLVST AMSSGVPLNV SSSQAAQVQA HAMQQQQQQN GPDLEQTSQG SEQDHQLPPT 360 AMTVFPERPS EDGYNWRKYG QKQVKGSEYP RSYYKCTQAN CPMKKKVERS HDGQVTEIVY 420 KGDHNHSKPQ PTRRLALSGG QVGAGFLSSV KNEGGGAEQD IMDSSRAGRL APSLSFTLGG 480 SGVLEPSSSS SSDDEGEEGS KLSVEDGDDD EPDSKRRRKD KKVKEVIPAS RTIREPRVVV 540 QTTSDVDILD DGYRWRKYGQ KVVKGNPHPR SYYKCTNVGC IVRKHVERAS TDVKAVITTY 600 EGKHNHDVPA ARNSGSDTLA QNTAPVIPAA TSLQDQGARF GNRNFGQLLD DGSFKREKSA 660 ADVDSGMRVG MVAANGEVPV SASLGHSDLG DGRAVQARDA FIHRGNFGAR PKQEQPESTS 720 QTSLIPSSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-38 | 371 | 610 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-38 | 371 | 610 | 8 | 78 | Probable WRKY transcription factor 4 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 515 | 520 | RRRKDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368161.1 | 0.0 | WRKY transcription factor SUSIBA2-like isoform X3 | ||||
TrEMBL | A0A2K1L2S7 | 0.0 | A0A2K1L2S7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S135_80V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 9e-81 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0001s0238.1.p |