PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0468.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 707aa    MW: 77020.9 Da    PI: 7.2424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0468.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.7e-18461550389
                           EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           k l psdv+++gr+vlpkk ae++        +e++ lt+ed  +g++W+v+++y  +++s+ ++l +++  Fv++++L+egD +++++
  Sphfalx0000s0468.1.p 461 KLLQPSDVSSLGRIVLPKKEAESClpylA--VKEGMLLTMEDfYTGKTWKVRYRYwpNNRSR-MYLIENTGVFVRSHQLEEGDLLILYR 546
                           8899**********************743..34789******99***********5444444.66666*******************94 PP

                           -SS.SE CS
                    B3  85 dgr.se 89 
                             + + 
  Sphfalx0000s0468.1.p 547 --NvEH 550
                           ..3344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-26458562IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-22458553IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.616459561IPR003340B3 DNA binding domain
SMARTSM010194.3E-17459559IPR003340B3 DNA binding domain
CDDcd100171.81E-21461546No hitNo description
PfamPF023628.6E-15461550IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MSTEATSEDI DFNLAEEWLR TTELQMQNPH VAAAAAAALS LLPSSQDQQS PYNFLPLEAS  60
ESAAASGFGE ELLDMPSHGG GSMISAAASS LLHAATATSA DLMMPIVKSD PPSSSSSSSS  120
QALDLSTREL CKKVTLNEAM MHQAIERLGG GEMGLKILMD KIRFWVGQRT SSNCCNTTPD  180
QQISISDSLQ QLCSTPPAAA TTPTTTYTNS PAANPMSTSP AHCSLQSYCV FGDLETTEAG  240
AASFYGAQPR SQAPKPRWQQ QQQEVQEPTE AWRNDHEMQN PKKRRRTVAC GAMGLAGMDL  300
SVHTGSARMS FRSGAGAQEQ FWDTVPFRAR LHHDKRSSAA SWNYISTQSA AATRAARKHR  360
MACQRLSKSY EALATAASSY NGSSKSNSSS LSLAMHRQQP DDDSKLAVER LPLLSHVAKK  420
LQEPITMSSS GVNKLQSSGN PFISNRHKGT GTGTLVMLLH KLLQPSDVSS LGRIVLPKKE  480
AESCLPYLAV KEGMLLTMED FYTGKTWKVR YRYWPNNRSR MYLIENTGVF VRSHQLEEGD  540
LLILYRNVEH DRIVIRGKKN AQPAEGIVPA VTNKSSKAPA MPIPRLDTKQ RVVMKQREET  600
VDGDQTNSQL KSKLHCAISA AFETAANSPK VEWAQFEDPS ELGNLMQGLI RDDKQCGTCG  660
LAGGKNPEHL VSFPSLEFGD LLMEDDVARV PCDFNLPGSI CKIEQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-294585654111B3 domain-containing transcription factor FUS3
6j9b_D7e-294585654111B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-34B3 family protein