PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0256.4.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 669aa    MW: 71863.4 Da    PI: 5.0285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0256.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-09502549455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P++    s K    a +L ++++Y++sLq
  Sphfalx0000s0256.4.p 502 SHSLAERVRREKISERMKFLQDLVPSC----S-KlTGRAVMLDETINYVQSLQ 549
                           8*************************9....4.5489***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-11496553No hitNo description
SuperFamilySSF474594.06E-15496558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-15498556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.307498548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6502549IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10504554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MSSFMAYCTA QAAPLEKSTT MPSHKLQPSA AGAGAAAGYV HMISSHSCSG ILQEPSSRRS  60
SQYSSYDLHP ASVYVATTPC SLSNSLPCSD DLSGDKTMVV QGEELSPPPA LLSKTTTTTC  120
GGNRSWSSSS LDYPAAVAAS FPSSVSLQNY CDDSSNNGGG QDWTQFSNSH ATFFSNGGPT  180
STHHFSSQAR CCWQPGFAGL NNIDDNLPPP PTGTNSSSTL NAAASASRQR LLSTIHDPSF  240
ASRFSYVNNN NSGYTCSHEQ QRSHSLSAAS EYTFFDGQDG FNAERESAIQ GKSTAEEEAD  300
HHLDCRQPGL LQAEFMERET EDISATVAFE YDEEGAAAAA GQGRNSSSFR LSQNAAWESA  360
FFVPRDGGAG ARNPGGGMGK RKTTPPGPPQ EEQQNNDHVY GTIRLEPCCF GGRDDAELLD  420
SSDEAAAAKR FKAGELGDSS AQSFKAEQST TSNHSGDESG SPHSMEDLNH HGLNLPLPPP  480
DHQAPTQDYI HVRARRGQAT DSHSLAERVR REKISERMKF LQDLVPSCSK LTGRAVMLDE  540
TINYVQSLQH QVEMVQSCAS PPTILMNSDH IVPHEQHPFQ EQYEVPFQLA SACATDFRDL  600
ELAVSEANKI HISSAPLFAC ITSMDSHGEP LSQTSNICES ELQSVVQMGI SADWDSLQNV  660
IKSHPKHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-35bHLH family protein